Cyclopterus lumpus (lumpfish): 117728813
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Entry
117728813 CDS
T09199
Symbol
wdhd1
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1 isoform X1
KO
K11274
chromosome transmission fidelity protein 4
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clum03036
]
117728813 (wdhd1)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
117728813 (wdhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Mcl1_mid
Beta-prop_THOC3
Ctf4_C
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WD40_Prp19
HMG_WDHD1
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
eIF2A
Beta-prop_SCAP
HMG_box
Beta-prop_WDR19_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR35_TULP_N
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
NBCH_WD40
Beta-prop_WDR75_1st
Tricorn_2nd
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
117728813
NCBI-ProteinID:
XP_034385597
Ensembl:
ENSCLMG00005003392
LinkDB
All DBs
Position
3:complement(28786492..28809228)
Genome browser
AA seq
1125 aa
AA seq
DB search
MPCDRKPMRYGHSEGHTEVCFDESGKFLVTGGNDGDVRIWDGLDDDDPKFITVGEKVYSL
ALKNGKLVTASSNNTVQIHTFPDGEPDGILTRFTTNATHVAFNGSGSRVAAGSSDFMVKV
VEVSDSSQQKTLRGHEAPVLSVTFDPKDDFLASASCDGSVVVWNIEEQSQLIRWPLLQKT
NDVSNAPSLCRLAWQPAAAEFLAVPVETKVHLYERGSWNHVSTLSDDLLTQLVNVVVWSP
CGRFLAAGGVGGSLTVWDVSSKLCVERQKHEKGFTVCGLAWSPSGSQLAYTDTEGCLGLL
DGLGSSGSSSGTTRAKKAAKDFDDLFDDDDDRPMDEGLSDGHSPGKKPHEDDEDEDDFHV
PATGRARNRGAILDDENSLDAGSVTLSRDKYDVADGGAVLPAAAAPAPPLRPAYEGPLPT
APQKAFQPGSTPAHLTHRFMMWNSVGIIRGYNDEEDNAVDVEFHDTAVHHAMHLTNSLGH
TMADLSQEAVLLACPGTDELASKLQCLHFSSWDTNKEWMVDLPPGEDVRALCLGRRWAAV
ATSALMLRLFSIGGVQREMFSLPGNVVSMVTHGEQLLIVYHRAPGFDGDQALGVQLLQVG
RRPKQLIHGEPLPLSPRTHLAWLGFSAEGTPCYVDSDGVVRMLNRSLGNTWTPVCNTRET
CKSKSDHYWVVGIHENPQQLRCIPCKGSRYPPTLPRPAVAILPFKLPLCQTSTEKGLMEE
QYWRSVLFHNHFSFLSSSGYEVDEEQQTRSQKEQQELLMKMFALSCKLEREFRCVELAEL
MTQNVVTLAVRYAARSRRMALAQRLSELALEKANQMQEEEPEEEEEEPESSAGRRPSGSE
VTGRRHSNRRHQEEEEEEEEPVEELREEEEDEREEEETSKCSAGGNPFVKETGSPGTPSV
TPIGKVGRANPFKVLGSGKPSSSPAHRATSILDNMASGRKSSPLAGSVGKPNKGPVLKPL
APRPKTKTQSTLLQMTSLKKKTTREVSQPAAEQQKQPEAPPPAPPPASPADNAENTRPKT
GFQLWLEENRKSISADQPDLEETDVIKEAMGRFRTLTAEERLSWTERAKGQTGDDLKKRK
RGGGDGGGGDGGGGDGQAEADENSAKKKKSLDPSAKLSAFAFNKN
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgccctgcgacaggaagccgatgcgctacgggcactcggagggacacaccgaggtctgc
ttcgacgagtccgggaagttcctggtgaccggcggcaacgatggagacgttcgtatctgg
gacggtctggacgacgacgacccgaagttcatcaccgtcggggagaaggtgtactcgctg
gctctcaagaacggcaagctggtgacggcgagctccaacaacacggtgcagatccacacg
ttccccgacggcgagccggacggcatcctgacccgcttcaccaccaacgccacgcacgtc
gccttcaacggcagcggctccagggtcgccgccggctccagcgacttcatggtgaaggtg
gtggaggtgtcagacagcagccagcagaaaacgctgcggggccacgaggcgcccgtcctc
agtgtcacctttgaccccaaagatgacttcctggcgtccgccagctgcgacggctcggtg
gtggtttggaatatcgaggagcagtctcagctgatccgctggcctctgctgcagaagacc
aacgacgtcagcaacgcaccgtccttgtgccggctggcctggcagccggcggcggccgag
tttttagcggttcctgtcgagacgaaggtgcacctgtacgagcgagggtcctggaatcat
gtgagcacgctgtccgacgacctgctgacacagctcgtcaatgtggtggtctggtctccg
tgtggtcgcttcctggcggccggcggcgtgggggggtctctgacggtgtgggacgtgagc
agcaagctctgcgtggaaaggcagaagcacgagaagggcttcacggtgtgcggtctggcc
tggagcccgtcgggcagccagctggcctacaccgacacggagggctgcctggggctgctg
gacggactcggctcctccggctcctcctccggcaccacgcgggcgaagaaagccgcgaaa
gacttcgacgacctgtttgacgatgacgacgaccgcccgatggacgaagggctgagcgac
ggccactcgccgggcaagaaaccccacgaagacgacgaagacgaagacgacttccacgtg
ccggcgacggggcgggcgaggaaccgaggagcgatcctggacgacgagaactcgctggac
gccggctcggtgacgctcagtcgggacaaatacgacgtcgccgatggcggcgccgtcttg
ccggccgccgccgctccggctccgccccttcgccccgcctacgagggtcccctgccgacg
gcgccccagaaggccttccagccgggctccaccccggctcacctcacgcaccgcttcatg
atgtggaactcggtggggatcatccgaggctacaacgacgaggaggacaacgccgtggac
gtggagttccacgacacggccgtgcaccacgccatgcacctcaccaactcgctgggtcac
accatggccgacctttcccaggaggccgtgctgctggcctgccccggcacggacgagctc
gccagcaagctccagtgcctccacttctcgtcctgggacaccaataaggagtggatggtg
gacctgccgccgggcgaggacgtgcgggcgctgtgcctcggccggcgctgggcggcggtc
gccaccagcgcgctgatgctcaggctcttctccatcggaggagtccagagggaaatgttc
agcctgccggggaacgtggtctccatggtgacgcacggagaacagctgctcatcgtctac
caccgggctccgggcttcgatggggatcaggctctgggcgtccagctgctgcaggtcggt
cgaaggccgaagcagctcatccacggcgagccgctccccctgtccccccggacccacctg
gcctggctcgggttctccgccgaggggaccccgtgctacgtggattcggacggggtggtc
cggatgctgaaccgttcccttggcaacacgtggacgccggtgtgcaacaccagagaaacc
tgcaagagcaaatcggaccactactgggtggtcgggatccacgagaaccctcagcagctc
aggtgtattccgtgtaaaggctccaggtatccgcccacgctgccccggccggcggtggcc
atcttgcccttcaagctgcctctgtgccagacctccacggagaaaggactgatggaggag
cagtactggcgttcagtcctcttccacaaccacttcagcttcctgtcgtccagcggctac
gaggtcgacgaggagcaacaaactcgttcccagaaggagcagcaggagctcctcatgaag
atgttcgctctgtcctgtaagctggagagagagttccgctgcgtggagctggcggagctc
atgacccagaacgtggtgacgctggccgtccgctacgcggcgcgctcccgccgcatggcg
ctcgcccagcggctcagcgagctcgccctggagaaggccaatcagatgcaggaggaggag
ccagaggaggaggaggaggagccagagtcctccgccggcagacggccctctgggtctgag
gtcacgggacgacgtcatagcaacagacgtcatcaggaggaagaggaggaagaggaggag
ccagtagaagagctcagagaggaagaggaggatgaaagggaggaggaagaaaccagtaaa
tgttctgcaggtgggaatccatttgtcaaagaaaccggttcacctggaactccttctgtg
acaccaattggtaaagtcggccgtgcgaatcctttcaaggtcctcggctcggggaagccc
tcgtcttcgccggctcatcgagcgaccagcatcctggacaacatggcgtccggcaggaag
tcgtctccgctcgccggctcggtggggaaacccaacaaagggcccgtcctcaagccgctg
gccccgcggcccaaaaccaagactcagtccactctgctgcagatgacgagcctgaagaag
aagacgactcgggaggtcagtcagccggctgccgagcagcagaaacaaccagaagccccg
cctccagccccgcctccagcctctcccgcagacaacgcagaaaatacaaggcccaagacc
ggcttccagctgtggctggaggagaacaggaagagcatcagcgccgaccagccggacctg
gaggagacggacgtcatcaaggaggccatgggccgcttccggacgctgacggccgaggag
cgcctgtcgtggacggaaagagcaaaaggccaaactggagacgatctgaagaagaggaag
agaggaggaggagatggaggaggaggagatggaggaggaggagatggacaggcggaagca
gatgaaaatagtgccaaaaagaagaaatctttggatccctccgccaagctttcagcgttt
gcttttaacaaaaactga
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