Cyclopterus lumpus (lumpfish): 117728869
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Entry
117728869 CDS
T09199
Name
(RefSeq) C-myc promoter-binding protein-like
KO
K20163
DENN domain-containing protein 4
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117728869
Membrane trafficking [BR:
clum04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
117728869
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
dDENN
uDENN
PPR_2
PPR_3
DUF2464
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
117728869
NCBI-ProteinID:
XP_034385688
Ensembl:
ENSCLMG00005003428
LinkDB
All DBs
Position
3:28993719..29058834
Genome browser
AA seq
1910 aa
AA seq
DB search
MMEDKGPRVADYFVVAGLTDPSKPLDQEIHFDDVCHKTAKPRAPITDVAVVIRSVGEEVP
PGFTCVEETPTGHSADLNNGGLMVPQIFLCYRRGRDKPPLTDLGVLYEWKERLMQGCQLI
QTTPAGRPANISGNSSQRIYVTYRRAPESQPHSALALTDICIIIPGKGETPPHTFCKVEK
NLNSSMWGSTVYLCYKKSVAKTNTIAYKAGLFSRYPEEDYESFPLPESVPLFCLPMGATI
ECWPANTKYSLPVFSTFVLTGASGEKVYGAAIQFYEPFPPECLTDLQRSQLGLLSPDPPK
PSSSSSSSSSSSSSSSTTTPRSVYTNKCICLLSHWPFFDAFRKFLTFLYRYSISGPHALP
IEKHISHFMHKVPFPSSQRPRILVQLSPHDSLMLSQPVSSPLPLSGGRFSMLLQNLGPEN
AVTLLVFAVTEHKILVHSLRPAVLTSVTEALVSMIFPFHWPCPYIPLCPLALAGVLSAPC
PFIVGVDSRYFDLYDPPPDVSCVDLDTNTIFHNEDKRAVTWKILPKKACKNLMNVLSALY
QQLVDGQQRPDGLLELSMSSSSELSCGKTILTLELEIQEVFLRFMAAILKGYRSFLRPIT
QAPSEKATDASSLFDLQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSDKDASLAFF
DDCVDKLYNSERSADKGGKVDGDRAEESRLIETDESQRSEHTVFITPPELPPLPGGEEYP
LCYRYDGFPVLSLDLFDPVEGLRTPSSRLAAKHSCPTSPAPVFRRTKQEIKSAQKIAKKN
SSVPQLWSKCLLRHCYGLWFICLPAYVKVCHSKVRALRTAYDVLRKMQAKKLQPPDEVCY
RVLMQLCGQYGQPVLAVRVLFEMKKAGVHPNAITYGYYNKAVLESTWPSSTRGGYFLWMK
LRNVVLGVAQFKRALRRPAPLTQSPLSDGSDLDSLEVSNHAPFASARVEPTDDRCSTGDQ
SDLGYNSLSKEEVRRGEPGAQEAKDDKKESDCSSLSETESTKGSKDLLPQLDQEAPPSFR
PRGIVRSSCPYDEASCKPKSSVSAGHVAGLLFTSSLDEIGEVHTNPLLRRHKSALEEVVV
LGLGMSRGETDPDKIAGHLGADVKILSGTDFRKRPRSLALGGTDHREEDEEGRDSSDEDR
SNTDAIFDLEDLDLDKPSGGGGGRSHKKPVERSASYGGVKRTGIQTGDDPLSLLAAECQT
DEDRDPEGDEAGTPSARGHLAREIELYMNHMGSPLSSRTPSLDLQDLAGPPLLHPLSAPR
RASLPHGSPLRAAGVTRSRTFQPPSPSRPVPRQRLLSSPSCRSSGATTPSASPRPSPRPS
PRPSPCRDRADRLSLASPSPSSSSFALDTLLTPSLDVFKTSVFSAGKGVAEKASRWYSRL
ATYTTPTKDGHSDRLSVGDPDCSSLLDEEDSRGSEGSVISPRRIGPAGRRRSPRRGRLES
PSAGSSLGRPTSLLPGCVLSPPGFPLPDKSDLGSSRYTSSTSIFNNYAMELLISSCSRCK
TCDCLVYDEEIMAGWTADDSNLNTTCPFCGNPFLPFLNVEIRDTRGPGRLFLKGSPSVDE
ALTSSCSASTGLDTSTLSTPCPTTALFPPSPLFPPSPLIAVQECLGSGRTPPTTSQGISI
RPGSPTPGAPLARSVSAFGPLDEAPRLARRVPTSGSLPSRLHEATDPLSIEWRLHHPEPV
TVPYLSPLVLWKELESLLENEGDPVITEAHVVDQHPIIYWNLVWYFRRLDLPSNLPGLML
TSEHCNRESQVPRPWMSEDSKHVLIQILWDNLKLHQDSVQPLYILWNTFNVGYPLSRPVP
EEEKPLSEELLQSVVKSIQRNDISRPMAQLLQLLGQTLGVKRQRSLYRDILFLSLVALGK
DNIDIDSFDREYKLAFDRLAPSLVKLTHNCDRPPSTGVMECRRTFGEPYL
NT seq
5733 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacaaaggcccccgtgtagcggactactttgtggtggccggtctgacggac
ccgtccaagccgctggaccaggagatccactttgacgacgtctgccacaagacggccaag
ccccgggcgcccatcaccgacgtggcggtggtgatccgctccgtgggcgaggaggtgccg
ccggggttcacctgcgtggaggagacgccgaccggccactcggccgacctcaacaacggc
ggcctcatggtgccccagatcttcctgtgctaccggcggggtcgagacaagccaccgctc
accgacctgggcgtgctgtacgagtggaaggagcggctgatgcagggctgccagctcatc
cagaccacgccggccggccgtccggccaacatcagcggcaactcctcccagcggatctac
gtcacctaccgccgggcgcccgagagccagccgcactccgccctggccctcaccgacatc
tgcatcatcatcccgggcaaaggggagacgccgccgcacaccttctgcaaggtggagaag
aatctcaacagcagcatgtggggctccactgtgtacttgtgttacaagaagtctgtggcc
aaaaccaacaccatcgcctacaaagcaggtctgttcagcagatacccagaggaggactac
gagtcgttccccctgccggagtcggtccctcttttctgcctgcccatgggggccaccatc
gagtgctggccggccaacaccaaatactccctccctgtgttctccaccttcgtcctcacc
ggagcctccggagagaaggtctacggtgcagccattcagttctacgagcccttcccaccg
gagtgtctgaccgacctgcagcgctcccagctgggtctcctgagccccgatccaccaaag
ccctcctcctcctcctcctcctcctcctcctcctcctcctcctcctccaccaccacccca
cgctcggtctacaccaacaagtgcatctgtctgctctcccactggccgttcttcgacgct
ttccgcaagttcctgacgttcctctatcgctactccatctccggccctcacgccctgccc
atcgagaagcacatctctcacttcatgcacaaagtcccgttcccttcctcccagaggcct
cgcatcctggtgcagctttctcctcatgacagcctgatgctgagccagccggtgtcgtct
cctctgcccctcagcggcggccggttctccatgctgctgcagaacctcggaccggagaac
gccgtcaccttgctggtcttcgccgtcacggagcacaagatcctggtccactcgctgcgg
cccgccgtgctgaccagcgtcaccgaggcgctggtgtcgatgatcttccccttccattgg
ccctgcccctacatccctctgtgccccctggcgctggccggcgtgttgagcgccccctgt
cccttcattgtgggcgtggactcccgctactttgatctttacgacccgcccccggacgtg
agctgcgtggacctggacaccaacaccatcttccacaatgaagacaagcgagccgtcacg
tggaagatcctgccgaagaaggcctgcaagaacctgatgaacgtgctgagcgcgctctac
cagcagctggtggacggccagcagcggcccgacgggctgctggagctcagcatgagctcc
tcctccgagctgagctgtgggaagaccatcctcacgctggagctggagatccaggaggtc
ttcctgcgcttcatggcggccatcttgaagggctaccgctccttcctgcgacccatcacc
caggcgccctcggagaaggccaccgacgccagctcgctctttgacctgcaagggttcctg
aagagccgcgaccgctcgcaccagaagttctactctctgatgaccaagacccagatgttc
atccgcttcatcgaggagtgctccttcgtcagcgacaaagacgccagcctggccttcttc
gacgactgcgtggacaaactttacaactcagagcggagtgcagacaaaggaggaaaggtg
gacggcgaccgagcggaggagagccggctgatcgagaccgacgagtctcagcgcagcgag
cacaccgtcttcatcaccccccccgagctgccccccctccccgggggggaggagtacccg
ctgtgctacaggtacgacggcttcccggtgttgagtctcgacctcttcgaccccgtggag
ggcctgaggaccccgtcctcccgcctcgccgccaagcacagctgccccacaagccccgcc
cccgtgttcaggcgcaccaagcaggagatcaaatcagcacagaagatagccaagaagaac
tcgtccgtgccccagctgtggtccaagtgcctcctgcgtcactgctacggcctgtggttc
atctgcctgccggcgtacgtgaaggtgtgccactccaaggtgcgcgccctgcgcacggcg
tacgacgtcctcaggaagatgcaggcgaagaagctgcagccccccgacgaggtctgctac
cgggtgctgatgcagctgtgtgggcagtacggccagcccgtcctggccgtcagggtcctc
tttgagatgaagaaggccggcgtgcaccccaacgccatcacctacggctactacaacaag
gcggtgttggagagcacgtggccctccagcaccagaggagggtacttcctgtggatgaag
ctgaggaacgtggttctgggcgtggcccagttcaagcgggcgctccgccgccccgccccc
ctcacccagagtcctctgtcagatggcagcgacctggacagcctggaagtctctaaccac
gcccccttcgccagcgcccgggtagagcccactgacgataggtgtagcacaggggaccaa
tcagatctgggctacaactcgctgtccaaagaggaggttcggagaggagaacccggagct
caggaggccaaagacgacaagaaggagagcgactgcagctccctgtcggagacggagagc
accaaggggagcaaggacctcctccctcagctggaccaggaggctcctccctctttccgg
cctcggggcatcgtacgcagcagctgtccgtacgacgaggcctcctgcaaacccaagagc
tccgtcagcgcaggccatgttgcggggctcctcttcacctcctccctggatgagatcggg
gaggtccacaccaaccctttgctccggaggcacaagagcgctctggaggaggtggtggtc
ctcggcctgggcatgagccggggggagaccgacccggacaagatcgccggacacctcggc
gcggacgtcaagatcctctccggcaccgacttcaggaagaggcctcgctcgctggctctg
ggcgggacggaccacagggaggaggacgaggaggggcgggactcgagcgacgaggacaga
agtaacacggacgccatttttgatttggaggatctggatttggataaaccgagcggcggc
ggcggcggcaggtcccacaagaagcccgtggagcgcagcgcgagctacggcggcgtgaag
cgcacgggcatccagacgggcgacgacccgctgtccctgctggcggcggagtgtcagacg
gacgaggaccgggacccggagggcgacgaggccgggacgccgagcgcccgcgggcacctg
gcccgggagatcgagctctacatgaaccacatgggcagcccgctgagcagccgcacgccc
agtctggacctgcaggacctcgccggcccgcccctcctccacccgctctcggccccccgc
cgggccagcctgccccacggctcccccctcagggcggccggagtgacgcgctcccgcacc
ttccagccgccatcgccctcccgccccgtcccgcgccagcgtctgctgtcctcgccctcc
tgccgcagctccggcgccaccacgcccagcgccagcccccgacccagcccccgacccagc
ccccgacccagcccctgcagggaccgggcggaccggctgagcctggcgtcgccttcgccc
tcctcctcctccttcgctctggacactctgctcacgccgtcgctcgacgtgttcaagacc
agcgtgttctccgctgggaagggcgtggcagagaaggcgagccgctggtactcccgtctc
gccacatacaccacgcccaccaaggacggtcacagcgaccgcctcagcgtcggggatccg
gactgctcctccctgctggacgaggaggactctcgggggtccgagggctccgtgatctct
ccgcggaggatcggccccgcggggcggcgcaggagcccccgacgcggccggctggagagc
ccctctgcgggctccagcctcgggagacccacgtctctgctccccggatgcgtgctctct
cctcccggcttccctctgccagacaagtctgacctcggctcctcacgctacaccagcagc
accagcatcttcaacaactacgccatggagctgctgatctccagctgttctcgctgtaag
acgtgtgactgcctggtgtacgatgaggagatcatggccggctggacggcggacgactcc
aacctgaacaccacgtgtcccttctgtgggaacccgttcctcccgttcctgaacgtggag
atccgggacacgagaggacccggcaggctgttcctgaagggcagcccgtcggtggacgag
gccctgacctcgtcgtgctccgcctccaccggtctggacacctccaccttgtccacgccc
tgccccaccacggccctcttccccccctcccccctcttccccccctcccccctgatcgct
gtgcaggagtgcttggggagtggaaggactcctcccaccacatctcaggggatcagcatc
cggccgggctctccgacccccggggcgccgctggcccgcagcgtcagcgccttcggcccc
ctggacgaggcgccgcgtctcgcccgccgcgtgccgacgtcgggcagcctgcccagccgc
ctgcacgaggccacggaccccctgagcattgagtggcggctgcaccaccccgagccggtg
acggtgccctacctgagcccgctggtgctgtggaaggagctggagagcctgctggagaac
gagggcgacccggtgatcacggaggcccacgtggtggaccagcaccccatcatctactgg
aacctggtctggtacttcaggcgcctggacctgcccagcaacctgcccggcctcatgctc
acctcagagcactgcaaccgggagtcccaggtgccccggccctggatgtctgaggacagt
aaacatgtgttgatccagatcttgtgggacaacctgaagctgcaccaggactcggtccag
ccgctctacatcctgtggaacaccttcaatgtgggttaccctctgtctcggcccgtcccg
gaggaggagaagccgctcagcgaggagctgctgcagagcgtcgtgaagagcatccagagg
aacgacatcagccggccgatggctcagctgctgcagctgctgggccagacgctcggggtc
aagaggcaaaggagtttgtaccgagacatcctcttcctctctctggtggcgctgggaaaa
gacaacattgacattgactccttcgatcgcgagtacaagctggcgttcgaccgcctggcg
ccgagtctggtgaagctgacccacaactgtgaccgcccccccagcaccggggtcatggag
tgccgcaggacgtttggagagccttacctgtaa
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