Cyclopterus lumpus (lumpfish): 117728903
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Entry
117728903 CDS
T09199
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
117728903 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117728903 (cngb1a)
Ion channels [BR:
clum04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
117728903 (cngb1a)
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
117728903
NCBI-ProteinID:
XP_034385719
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All DBs
Position
3:complement(31276823..31321612)
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AA seq
1266 aa
AA seq
DB search
MTARWPLFVFHNILDVSAYNAFVIWREINPDWMPGKRNKRRVFLEQLGKAVVSPFMERRP
APGSPGVLTWISGALPQRAVSPKLSRANSTKIVTVWMILNLWSSKTSMLVSIVLHHRKGM
MAWIAQGLEKVVPQPDINRKETPAAQQPTEVQQTAASTAAELQVPVEEELLQEDHKPLPP
SMMGWIVSEFGRMLPQPVQKQDAGTDEVQNINIVQKKTDLVLEDMGQDQDKEAEQKKEDL
TGDAEVAKVDQCSPAMDNIRKDSGEEVLAYMEDRLQQDHLEAARIAEEIARKAAEEAVRQ
LEVEHSAKIVIETLPESNEQLPNILEEENEDDPENLMEVCPADATPSSTHVEPVSERRDL
DSPDSQTITQQPQSQAPIDQVIVLYLANAAEGECGVPNACSPIKSFLLHFPRTAECLESC
WTLMRDHYLVPARLSPPPELAQLTQELSQLPGQARQCCTSIIQTFEVPNKPPSSKPSHIL
FLLSPIMHCCPALRCELTADLRPGGCAGAVGGAPELRVEDVDQDVGQGLNIPKMTTTPEF
RTLSAPLSKLSAAGDLSADVDDNEMSTTGLKTWSRQGDLLTADDEMSPLSAASVGSVIIQ
DRLSELVRLFKGRTERQKDRLVDPDESEEDSPSASPSKAPPPPPPPPPEEKKDDVPPAAE
EEEEEEEKAFVLPFELLGRSVTIPKLPKLPPMPSWVQVLVDYRFPSSIDPFTDLIYVLWL
FCVVAAWNWNVWLIPIRWAFPYQTSENLHLWLLMDYTCDLIYIADILVFQPRLQFVRGGD
IVCDKKDMRENYMTTERFKMDVISLFPLEILYCFTGVNSLLRFPRLLKYMAFFEFNDRME
AVMKKAYIYRVIRTSTYLLYSLHINACLFYWGSDYEGLGSTKWVYNGKGNAYIRCYYFAV
KTLITIGGLPDPTTVFEICFQLINYFVGVFAFSIMIGQMRDVVGAATAGENYYRACMDST
VKYMNSYNIPGEVQNRIKTWYDYTWKSQGMLDEQELLMQLPAKMRLDMAVDVNYTIVSKV
ALFQGCDRQMVFDLLTRLKSVVYLPGDFVCKKGEIGREMYIIKQGEVQVVGGPDLQTVFV
TIRSGSVFGEISLLAGGGGNRRTANVKAHGFANLFILDKKDLAEILVHYPESQKLLRKKA
KTMLTKDTKPDEKAGAKEAMQVIPPRPDTPVMFKAALKVSQQVGIEGTFTKLRKTYQQAE
TTAEVRHCLRTDRVPPPSPMHHRSPVPLVAVQDHDDAVSESTDSAVVIRMMAKPRGEELL
TVVEKE
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcacgctggcccctgttcgtcttccacaacatcctcgacgtgtccgcctacaac
gccttcgtgatatggagagagatcaaccccgactggatgcccggcaagcggaacaagagg
agggtgttcctcgagcagctgggaaaggcggtcgtgtctccgttcatggagagacgtcca
gcacctggttctcctggtgtgctgacgtggatcagcggtgctctgcctcagcgagccgtc
tctccaaagctcagtcgagctaactctaccaagatcgtcaccgtctggatgattctcaac
ctctggtcgtcaaagacatcaatgctggtttctattgtcttgcaccacagaaaagggatg
atggcttggatcgctcagggtctggagaaagtggtccctcagcccgatataaacaggaag
gagactccagcagctcagcagcccactgaggtccagcaaacagcagcttcaacagctgca
gagcttcaggtccctgtggaggaggagctactccaagaggatcacaagccactgccaccc
agtatgatgggatggatcgtcagtgagtttggccgcatgttgcctcagccggtgcagaag
caggatgcaggcactgatgaggtgcagaacataaacatcgtacagaagaagacggacctg
gtgctggaggacatgggacaggaccaggacaaagaggctgagcagaagaaagaggatctg
acaggagatgcagaggtggccaaagtggatcaatgcagtccagcgatggacaacatcagg
aaggattctggagaggaggttctggcttacatggaggacagactgcagcaggaccatctg
gaggcagcccgcatcgcagaggagatcgccaggaaggcagcggaggaggccgtccgacag
ctggaggtggagcattcagctaagattgtcatcgaaacgctgccagagtccaacgagcaa
ctgcccaacatccttgaggaggaaaacgaggacgatccagagaacctgatggaagtctgt
ccggctgatgccactccttcatcaacacatgtggagccagtgtcagagaggagagacctg
gatagtccggactcccaaaccatcacccaacaaccacagtcacaagctccaatagatcag
gtgattgtgttgtacctggccaatgcagcagaaggagaatgtggagttcccaacgcttgt
tctccgataaagagctttctgcttcacttcccgcgcactgctgagtgtctggagagctgc
tggacactgatgcgtgaccattacctcgtccctgccagactgagcccgccgccggagctt
gcccagctgacccaggagctctcgcagctccccgggcaggcgcgacagtgctgcacgagc
atcatccagacctttgaagtgccaaacaagccaccttcatccaaaccatcccacatcctc
tttctcctctctcccatcatgcactgctgccctgcactgcgctgcgagttgacagctgac
ctcaggccagggggctgtgctggagctgtgggtggagctccagagctgagggtggaggat
gtggatcaggatgtggggcaaggcctgaacatccctaaaatgaccacaaccccagaattc
agaactctgagtgccccgctgtcaaagctcagtgctgcaggggatctgtctgctgatgtg
gatgataatgaaatgtcgacaactggtctgaagacctggtccaggcagggagacctgctg
actgcagacgatgagatgagtcctctgtcagcagccagcgtcggcagcgtgatcatccag
gaccgtctgagcgagctcgttaggctgtttaaaggtcggacggagcggcaaaaagaccgg
ctggtggacccagacgagtctgaagaagacagtccttcagcctcaccgagcaaagctcct
cctcctcctccacctcctcctccagaagagaagaaggatgatgtccctccagcagcagaa
gaggaagaggaagaggaagagaaggcgtttgtgctcccctttgaacttttgggacgttca
gttacaattcctaaactgcccaaacttcccccgatgccgtcctgggtccaagtccttgtg
gattaccgcttcccttccagcatcgacccgtttaccgatctcatctacgtcctctggctc
ttctgtgtcgtggcagcgtggaactggaacgtgtggttgatccccatccgctgggcgttc
ccctaccaaacttccgagaacctccacctgtggttgctgatggactacacctgtgacctc
atctacatcgccgacatcctcgtcttccagccccgactgcagtttgtccgcgggggagac
atcgtgtgtgataaaaaggacatgagagaaaactacatgaccactgagagattcaagatg
gatgtcatcagtctgtttcccttggagatcctctactgtttcacgggcgtcaactcgctg
ctgaggttccctcgtctgctgaagtacatggctttctttgagttcaacgacagaatggag
gctgtgatgaagaaggcatacatctacagggtgatccggacctccacctacctgctgtac
tctctgcacatcaatgcttgtctcttctactggggatcagactatgaaggactggggtct
accaagtgggtctacaacgggaaaggcaacgcttatattcgctgttactattttgccgtg
aagacgttgatcaccatcggaggactcccggaccccaccaccgtctttgagatctgcttc
cagctcatcaattactttgttggtgtctttgccttctccatcatgatcggtcagatgaga
gacgtggtaggagccgcgaccgccggggagaactactaccgagcctgcatggacagcacc
gtcaagtacatgaactcctacaacatccccggagaggtccagaaccgcattaagacctgg
tacgactatacctggaagagccagggcatgctggatgaacaggagctgctgatgcagctt
cccgctaagatgaggctggacatggccgtggacgtcaactacaccattgtcagcaaggtc
gccttgtttcagggctgcgacagacagatggtgttcgacctgctgacaaggctcaagtct
gtggtctacctgcccggagacttcgtctgtaagaagggggagatcggcagggagatgtac
atcattaaacagggggaggttcaggtggtgggcggtccagacctgcagacggtgtttgtc
accattagatccggctctgtgttcggagagatcagtttgctggcaggaggcgggggcaac
cgacggactgccaacgtaaaggcgcacggtttcgccaacctcttcatcctggataagaag
gacctggcagagatcttggtgcactacccagagtctcagaaactcctccgcaagaaagcc
aagacgatgttgacgaaggacacaaagccagacgagaaggccggagctaaagaggcgatg
caggttattccgccgagaccggacacacctgtaatgttcaaggcggccttgaaagtgtcc
cagcaggtgggaatagaagggaccttcaccaaactgaggaagacctaccaacaagctgag
accacagcagaggtgagacactgtctcaggacagacagagtcccccccccctctccgatg
caccaccgttctccggttcctctcgtggctgttcaggaccacgacgacgctgtgtcggag
tccaccgacagcgcggtggtcatcaggatgatggcgaaaccgcgaggagaggagctgctc
actgtggtggagaaggagtga
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