Cyclopterus lumpus (lumpfish): 117729021
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Entry
117729021 CDS
T09199
Name
(RefSeq) LOW QUALITY PROTEIN: calpain-2 catalytic subunit-like
KO
K03853
calpain-2 [EC:
3.4.22.53
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04141
Protein processing in endoplasmic reticulum
clum04210
Apoptosis
clum04217
Necroptosis
clum04218
Cellular senescence
clum04510
Focal adhesion
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117729021
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117729021
04217 Necroptosis
117729021
04218 Cellular senescence
117729021
09144 Cellular community - eukaryotes
04510 Focal adhesion
117729021
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
clum01002
]
117729021
Enzymes [BR:
clum01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.53 calpain-2
117729021
Peptidases and inhibitors [BR:
clum01002
]
Cysteine peptidases
Family C2: calpain family
117729021
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
117729021
NCBI-ProteinID:
XP_034385747
Ensembl:
ENSCLMG00005011463
LinkDB
All DBs
Position
1:27144317..27160681
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AA seq
701 aa
AA seq
DB search
MSGIAATLQHHRDKDRGIGSCSQAVKYLNQDYDALRRQCAESAALFQDETFPAMDSSLGF
KELGPGSYKIRGVSWERPTELTSDPEFIVSGASRTDICQGALGDCWLLAAIASLTLNEEV
LARVVPHGQSFRRGEYAGIFHFQFWQFGEWVDVVIDDRLPVKDGELMFVHSAEGREFWSA
LLEKAYAKMNGCYEALSGGSTTEGFEDFTGGIAEVHDLNKPEPHLFHIIQKAQNRGSLMG
CSIDITSSSDSEAVTSQKLVKGHAYSVTGAAEVEYRGNMEKLIRIRNPWGQVEWTGAWSD
NSTQWRQISDEDQDRLSHRSEDGEFWMSFNDFLRHYSRLEICNLTPDAXSDDSMSKWALS
KFDGSWRRGSTAGGCRNFPNTFWTNPQFVIRLDEEDDDPDDGENGCSFVVGLIQKNRRRM
RKMGEDMMTMGFAIYEVPEESRGQRNIHLNRNFFLRNASSARSETFINLREVCSRFCLPP
GEYLIIPSTFEAQKNGDFCVRVFSEKQAEFQELDDPIESRVEQIEIDEDDVDDRFRSLFG
QLAGGDCEISTFELQKILNKVVTKRSDIKTNGFNISTCRNMINMLDKDGSGKLGLVEFKV
LWTKIEKYLNVYREKDVDNSGTMSCTEMRTAVEEAGFSLNNPLHQVLVARYSDPDLTIDF
DNFVSCLVRLENMFNTFNTLDRDDSGTVEFSMMEWLNATML
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcatcgcggccacactgcagcaccaccgggacaaggaccggggcatcggctcg
tgcagccaggcggtgaagtacctgaaccaggactacgacgctctgcggcggcagtgcgcg
gagagcgccgccctgttccaggacgagacgttcccggcgatggactcctcgctgggcttc
aaggagctgggcccgggctcctacaagatccggggggtgtcctgggagaggcccacggag
ttgacctctgaccccgagttcatcgtctctggagcctccaggacggacatctgtcaggga
gctctgggtgactgctggctactcgccgccatcgcctctctgaccctgaatgaggaagtt
ctggctcgagttgttccacatggacaaagcttcaggagaggagagtatgccggcatcttc
cacttccagttctggcagttcggtgagtgggtggacgtggtgatcgacgaccgcctgccg
gtcaaagacggagagctgatgttcgtccactcggcggaggggagggagttctggagcgcc
ctgctggagaaggcctacgccaagatgaacggctgttacgaggctctgtctggagggtcc
accactgaggggtttgaggattttaccggaggaatcgctgaggtccacgacctgaataaa
cctgaaccacatctgttccacattatccagaaagctcagaaccgcgggtccctgatggga
tgctccatcgatatcacgagctcatccgactccgaggcagttacctctcagaagctggta
aaaggccacgcctattctgtgacaggtgcagctgaggtggagtaccgcggcaacatggag
aagctgatccggatcaggaacccctggggtcaggtggagtggactggagcctggagcgat
aactcaacccagtggcgtcagattagcgatgaggaccaagaccgtctgagccatcgctcg
gaggatggagagttctggatgtctttcaatgacttcctacgacattattcccggctggag
atctgtaacctgacgcccgacgccncgagcgacgactccatgtccaagtgggctctgtcc
aagttcgatggcagctggaggagaggatccaccgccggaggctgcaggaactttcccaac
accttctggacaaaccctcagttcgtgatccggttggatgaggaggacgatgacccggat
gacggagagaatggctgcagcttcgtggtcggtctgatccagaagaaccgcagacgcatg
aggaagatgggagaagacatgatgaccatgggatttgccatctacgaggttcctgaggag
tcccgcggtcagaggaacatccacctgaacaggaacttcttcctgcggaacgcctcctcc
gctcgctctgaaaccttcatcaacctgcgagaagtctgcagccgcttctgcctgccgccg
ggggagtacctgatcatcccgtccaccttcgaggcgcagaagaacggagacttctgtgtc
cgcgtcttctccgagaaacaggccgagttccaagagctggacgaccccatcgagtccaga
gtggaacagatcgagatcgatgaagacgacgtggatgatcggttcagaagtctgtttgga
cagctggcaggaggggactgtgagatctccaccttcgagctgcagaagatcctcaacaaa
gtggtgaccaaacgttctgacatcaagaccaacggcttcaacatctcaacgtgtcgcaac
atgatcaacatgctggacaaagacggcagcggtaaactgggtctggtggagtttaaagtg
ctgtggaccaaaatcgagaagtatctgaacgtctaccgtgagaaggacgtggacaactcg
gggacgatgagctgcacagagatgaggacggccgtggaggaagccggttttagtctcaac
aacccgctccaccaggtcctggtggctcgttatagcgacccagatctcaccatcgacttc
gacaactttgtgagctgtttggttcgtctagagaacatgttcaacacgttcaacacactg
gacagagatgactcaggaactgttgagttcagtatgatggagtggctgaacgcaactatg
ctctga
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