KEGG   Cyclopterus lumpus (lumpfish): 117729129
Entry
117729129         CDS       T09199                                 
Symbol
polr2eb
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03020  RNA polymerase
clum03420  Nucleotide excision repair
clum04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117729129 (polr2eb)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117729129 (polr2eb)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    117729129 (polr2eb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clum03021]
    117729129 (polr2eb)
   03400 DNA repair and recombination proteins [BR:clum03400]
    117729129 (polr2eb)
Transcription machinery [BR:clum03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     117729129 (polr2eb)
  RNA polymerase III system
   RNA polymerase III
     117729129 (polr2eb)
  RNA polymerase I system
   RNA polymerase I
     117729129 (polr2eb)
DNA repair and recombination proteins [BR:clum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      117729129 (polr2eb)
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C AAA_3 NYD-SP12_N
Other DBs
NCBI-GeneID: 117729129
NCBI-ProteinID: XP_034385763
Ensembl: ENSCLMG00005007020
LinkDB
Position
4:complement(23512105..23514931)
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVVELLGRYKLKESQLPRIQAGDPVA
RYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgacgaagaggaaacataccggctgtggaagattcgtaaaaccatcatgcagctg
tgccacgacagaggctacctggtgacacaggacgagttggaccagacgctggatgagttc
aagagtcagtttggagacaagcccagcgagggtcgccccagacgcacagacctcactgtg
ctggtggctcacaacgacgaccccaccgaccagatgtttgttttctttcctgaggagcca
aaggtgggaatcaagacgatcaagatgtactgtcagaggatgcaggaggagaacatcaca
cgagccatcattgttgttcagatgggcatgacaccgtcagccaaacagtctctcgttgac
atggcacccaaatacatattggaacagtttctacaacaggagctgctcattaacatcaca
gagcacgagcttgttccagagcacatcgttatgacaaaagaggaagttgttgaacttctg
ggaagatataaattaaaggaaagtcagttgccgaggatccaggctggagaccccgtggct
cgctactttggcttgaaaagaggacaggtggtaaagatcatccgacccagtgaaacagct
gggaggtacatcacgtacagactggtgcagtga

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