Cyclopterus lumpus (lumpfish): 117729136
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Entry
117729136 CDS
T09199
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
clum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117729136
03015 mRNA surveillance pathway
117729136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117729136
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117729136
5.6.2.5 RNA 5'-3' helicase
117729136
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117729136
mRNA cycle factors
Common to processing body (P body) and stress granule
117729136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
117729136
NCBI-ProteinID:
XP_034385770
Ensembl:
ENSCLMG00005000588
LinkDB
All DBs
Position
4:complement(13734616..13748697)
Genome browser
AA seq
1111 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLLNGGVEDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDSILYTPVFKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKT
FAVDETSVSGYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSL
IQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSR
EAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMN
ADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAD
RIKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ
IGIITPYEGQRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQG
IGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRES
LMQFSKPRKLVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGM
IGAGPGHMSAMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAH
QGASQGNGPNSQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEF
KSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctagacaccgaggaa
acggagttgctcggagcggacacccagggctccgagtacgacttcaccgatttcaccctt
cccagccagacgcagacccaaggccagacccagagccagctggacagccaggtaaacggt
cctgatgagggtcttctcaacgggggagtcgaggactcagtggccaaagccagccagctg
ttggccgagctcaactttgaggaagatgaagaagacacgtactacaccaaagacctgcct
ctgcacgcatgcagctactgcggtattcatgatccagcatgtgtggtgtactgcaatacc
agcaaaaagtggttctgtaatggacgtggcaacacatctggcagtcacattgttaaccac
ttggtgagagccaaatgcaaagaagtgacgctgcataaagatgggccactgggggagaca
gtgctggagtgttacaactgtggctgtcgcaacgtcttccttctgggtttcatcccggcc
aaggcagattctgtggtggtactactctgcaggcagccctgtgccagccagagtagcctg
aaggacatcaactgggatagttcacagtggcaaccacttatccaggaccgctgctttctg
tcctggctggtgaagatcccatctgagcaggagcagcttcgggcccgtcagattaccgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccactgccaccttggaagac
ctggagaaacctggagtggatgaggaaccccagcatgtgctgctgcgctatgaggatgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcaa
ggggatgagatctgcttgcggtacaagggagatctagcccctctgtggaaaggcataggt
catgtcatcaaagtccctgacagtatcctttacactcctgtctttaaagactatggggac
gaaattgccatcgagttgcgtagcagtgttggagcacctgtggaaatcccccacaacttc
caggttgactttgtgtggaagtccacgtcctttgacaggatgcagagcgccctgaagacc
tttgcggtggatgagacctctgtgtctggttatatttaccataaactgctgggccacgag
gtagaggatgtcaccatcaagtgccagctgccaaagcgctttactgcccagggcctgccc
gaccttaatcactcacaggtgtacgctgtgaagacagtgctgcagaggcctctcagcctg
atccaaggtccccctggtactgggaagactgtcacctctgccactattgtctaccacttg
tcccgtcaaggcaatggaccagttctggtgtgcgctcccagtaacattgccgtggatcag
ttgacggagaagattgacaagactggattgaaggtcgtcaggctttgtgctaagagccgg
gaggccatcgaatcaccagtatccttcctagctctgcacaaccagatcagcaacatggac
agcatgccggagcttcagaaactgcagcagctgaaggatgagaccggtgagctgtcatct
gctgatgagaagcgctacagggctttgaaacgaacagctgagagggagctgctcatgaat
gctgatgttatctgttgtacctgcgtcggggctggagatcctcgtctggccaagatgcag
ttccgctcgatcctgattgatgagagcacccaggccaccgaaccagagtgtatggtgcct
gtggtgcttggtgccaagcagctaattctggtgggtgatcactgccagttgggtcctgtg
gtgatgtgtaagaaagcagccaaggcaggtctgtcccagtccctgtttgaacgcttggtg
gttctggggatccggccaatccgcctgcaggtccagtaccgcatgcacccggctctcagt
gccttcccctccaacatcttctatgagggctccctgcagaacggtgtcactgcagctgac
cgcattaagaaaggctttgacttccagtggccgcaaccagacaagcccatgttcttctac
gtgactcagggtcaagaggagattgccagctctggaacctcctaccttaacaggacggag
gctgcaaacgtagagaagatcaccaccaggctgctgaaggcgggagccaaacctgatcag
atcggcatcatcaccccatacgagggtcagcgctcctacctggtccagtacatgcagttc
agcggctccctgcacaccaaactctatcagcaagtggaaattgccagcgtggacgccttt
cagggcagagagaaggactttatcatcctgtcttgtgttcgtgccaatgaacaccaggga
atcggcttcctgaatgacccacgccgtctcaatgtggcgctgaccagagccaagtacggc
gtgatcatcgtgggaaaccccaaggcgctctccaagcagccgctgtggaataacctgctg
aacaactacaaggagcagaaggtcctcgtggagggtcccctgaacaacctgagggagagc
ctcatgcagttcagcaagccccgcaaactggtcaacaccatcaaccccggtggacgcttt
atgagcactgcgatgtacgatgcccgtgaggccctcatccctggctctgcttacgaccgc
agcaatgctgccggacgtccgtccaacatgtactttcaaactcacgaccagattgggatg
attggggcaggccccggtcatatgtccgctatgaatattcccattcccttcaacctggtg
atgccaccaatgcctccgcccagctacctgggtcagaccaacggccctgctgcaggtcgt
ggagctatgaagggtaagcctggccgtggcgggcggcagagggtccgaggatcggcacac
cagggtgccagccaaggtaacggaccaaacagccaggccagccaggacggggcctcccag
cccttctcccaggggccgctgacacagggctacatctccatgagccagccctcccagatg
agccagcctggcctctcccagccggagctgtcccaggacagctacctgggcgatgagttc
aagtcccaaatcgatgtggctttgtcccaggactcaacttaccagggtgaacgtgcatac
cagcatggtggggtgactggactgtcacagtactaa
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integrated database retrieval system
