Cyclopterus lumpus (lumpfish): 117729168
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Entry
117729168 CDS
T09199
Symbol
pcdh10a
Name
(RefSeq) protocadherin-10a isoform X1
KO
K16499
protocadherin delta 2
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117729168 (pcdh10a)
Cell adhesion molecules [BR:
clum04515
]
Cadherins
Protocadherins
117729168 (pcdh10a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
DUF4621
Motif
Other DBs
NCBI-GeneID:
117729168
NCBI-ProteinID:
XP_034385858
Ensembl:
ENSCLMG00005019173
LinkDB
All DBs
Position
1:12779624..12798056
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AA seq
1053 aa
AA seq
DB search
MIWLLFLLSILDGAVSQLHYSVPEEQEPGSVVGNIAEDLGLDITKLSARRFQTVPSSRTP
YLEVNLENGALVVKEKIDREEICKQTIPCLLHLEVFLENPLELFRVEIEVMDINDNPPSF
PETDISVEISESAIPGTRFPVENAFDPDVGTNALSTYAITNNNYFYLDVQTQSDGNKFAE
LVLEKPLDREQQAVHRYVLTAVDGGIPQRTGTALLVVKVLDSNDNAPTFDQSVYSVNLRE
NSPVGTLIIQLNATDVDEGQNGEIVYSFSSHNAPRIKDLFDIDARTGRIEVAGEVDFEES
NTHQIYVQAKDLGANAVPAHCKVLVKLVDVNDNTPEIGFSTVTESVSEQDAPGTVIALFS
VSDRDSGENGHMSCEILGDVPFKLKSSFKNYYTIVTDGPLDRENTDSYTITVVAKDKGQP
SLATSKSIKVHVSDENDNAPRFTQAVYDVYVTENNVPGAFIHAVSALDPDVGQNALITYS
ILECDIQGMSVDTYVSINQDTGYLYALRSFDYEQLKEFGFMVQAKDSGAAELFSNTTVNV
IIVDQNDNAPTVIAPIGKNGTAKEHLPRSAEPGYLVTRIVAMDADDGENARLSYSILRGN
EMGMFRMDWRTGELRTARRISPKRDPQGFYDLLIEVRDHGQPPLSSSASVSVMLVDSVVE
GRSGDRGSASKAKETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKKLNLYTCLLSG
DCCLCCSSCCSRHARGRKQKKLSKSDIMLVQSTNVTSGVGPVGQVPVEESGVGGVGGGFG
SHHHQNQNSYCYQVCLTPESAKTDLMFLKPCSPSRSTDTDHTNPCGAIVTGYSDQQPDII
SNGTILSNETKHQRAELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATNR
GHSAGADLFSNCTEECKALGHSDRCWMPSFVPSDGRQGPDYRSNLHVPGMDATLPDTEVP
SSVDLSDQLTMTSTTASSTDRSFSTFGKDGQRSQSHHSLHHHLHQQQQQYSSSTLERKEY
DRGTLPYKPTFLCEYQYESSLGPYDFGLVQYRY
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgatttggttactattcctgctctccatcctggatggagcggtctctcagctgcactac
tccgtgccagaggagcaggaacctggctctgtggttgggaatattgcagaggatttgggg
ctggacattaccaaactttccgctcgccgctttcagacggtgcctagttcacggacacct
tatctggaggtgaacttagagaacggagcactcgtggtgaaggaaaaaattgaccgagaa
gaaatctgtaagcagaccatcccgtgcctattgcacctggaggtgtttctggagaaccca
ctggagctctttcgcgtggagatcgaggtgatggatatcaacgacaatccacccagcttt
cccgagacggacatttccgtggagatatcggagagcgccatccccgggacccgtttccct
gtggagaatgcctttgaccctgacgtaggcacaaacgcgctcagcacatatgccataacg
aataataactatttttaccttgacgtgcagacgcagagcgacgggaacaagttcgcagag
ctggtgctggagaagccgctggaccgggagcagcaggcggtgcaccgctatgtgctgacg
gctgtggatggcggcatcccgcagcggaccgggacggctctcctggtcgttaaagttctc
gactctaatgacaacgcgcccacctttgaccagtctgtgtactctgttaacctgcgggaa
aactctccggtgggcactctgatcattcagctcaacgccacggatgtggacgagggacag
aacggggaaatcgtttattctttcagcagtcataacgcgccgcggataaaggacttattc
gacattgacgccagaacaggtaggatcgaggtggcgggtgaggtggactttgaagagagc
aacacgcatcagatttatgtccaagctaaggatttgggggcgaatgcggtccccgcgcac
tgtaaagtgctggtcaaactcgtagacgtgaacgacaacacaccagagatcgggttcagt
actgtgactgaatccgtgagcgagcaggacgccccgggcaccgtgatcgcactttttagc
gtctcagaccgggactctggtgagaatggacacatgagctgcgagatactgggagacgtt
cctttcaagctgaagtcgtcttttaaaaactactacaccatcgtgacagacggaccgctg
gacagagagaacacagactcctacacaataaccgtggtggccaaagataagggtcagcct
tcgctcgccaccagcaagtccattaaagtgcacgtctccgatgagaatgacaatgcgcct
cgttttacgcaggctgtttacgatgtttatgtgactgagaataatgtgcccggtgctttc
attcacgccgtgagtgctctggaccccgatgtaggacaaaacgctcttattacctactcc
atattggagtgtgacatacagggcatgtctgtagacacgtatgtgtccataaaccaggac
accggctacctttacgcgctacgctcttttgattacgagcagctgaaggagtttggcttc
atggtccaggcgaaagactctggtgcggcggagctattctctaataccactgtaaatgtg
atcatagttgaccaaaatgacaacgctcccaccgtcatagcccccatcggaaaaaacggc
acagccaaagagcacctgccgcgctctgcggagcccggctacttggtgacgcgcatcgtg
gctatggatgcggatgatggcgagaacgcacggctgtcctacagcatcctgcggggcaac
gagatggggatgttccgcatggactggaggacaggggagctgaggacagcccgtaggatc
tctcctaagcgtgacccgcagggcttctacgacctgctgatcgaagtcagggaccacggg
cagccccccctctcctcctccgcgagtgtgagtgtgatgttagtggacagcgtggtcgaa
ggccgtagtggggatcgaggatcggcctccaaggcaaaggagacctcccttgacctcacc
ctaattctcattatcgccttgggctccgtgtctttcatcttcctcctggctatgatcgtg
ctggccgtgcgctgccaaaaggacaagaagctcaacctgtacacgtgcctgctctccggt
gactgctgcctgtgctgtagctcgtgctgtagcaggcatgctcgagggcggaaacagaag
aagcttagtaaatctgacatcatgttagttcagagcaccaacgtgacgtcaggggtcggg
ccagtggggcaggtgcccgtggaggagtccggtgtgggcggagtgggagggggcttcggc
tcccaccaccaccagaaccagaactcctactgctaccaggtgtgtctgacaccggagtcc
gccaaaacggatctgatgttcctcaaaccgtgcagcccctcccgcagcactgacacggat
cacaccaacccctgcggcgccattgtcacgggttacagtgaccaacaaccggacatcata
tccaatggcactattctgtctaacgagacaaaacaccaacgagcagaactcagctatctg
gtggacagacccagacgtgtcaacagctcggcattccaagaggcagacatcgttagctcc
aaagacagtggtcacggtgacagtgaacagggcgacagtgaccacgatgccaccaaccgg
ggtcattcagccggcgctgacctgttctccaactgcacggaggagtgcaaggccctgggc
cactccgaccgctgctggatgccatcctttgtgccatccgacgggcggcagggcccggac
taccgcagcaacctacacgtccccggcatggatgccaccctgcccgacactgaggtaccc
tcctccgtcgacctctccgaccaactgaccatgacctcaaccactgcctcgtccaccgat
aggtcattctccacctttggcaaggatggtcaaaggtcacagtcacaccacagccttcac
catcacctccatcagcaacagcagcagtacagctccagcacgctagagaggaaagagtat
gatagggggaccctaccgtacaaacctacctttctctgtgagtatcagtatgaaagttca
ctgggaccctatgacttcggtctggtccagtacagatactag
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