KEGG   Cyclopterus lumpus (lumpfish): 117729168
Entry
117729168         CDS       T09199                                 
Symbol
pcdh10a
Name
(RefSeq) protocadherin-10a isoform X1
  KO
K16499  protocadherin delta 2
Organism
clum  Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:clum00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:clum04515]
    117729168 (pcdh10a)
Cell adhesion molecules [BR:clum04515]
 Cadherins
  Protocadherins
   117729168 (pcdh10a)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_C_2 DUF4621
Other DBs
NCBI-GeneID: 117729168
NCBI-ProteinID: XP_034385858
Ensembl: ENSCLMG00005019173
LinkDB
Position
1:12779624..12798056
AA seq 1053 aa
MIWLLFLLSILDGAVSQLHYSVPEEQEPGSVVGNIAEDLGLDITKLSARRFQTVPSSRTP
YLEVNLENGALVVKEKIDREEICKQTIPCLLHLEVFLENPLELFRVEIEVMDINDNPPSF
PETDISVEISESAIPGTRFPVENAFDPDVGTNALSTYAITNNNYFYLDVQTQSDGNKFAE
LVLEKPLDREQQAVHRYVLTAVDGGIPQRTGTALLVVKVLDSNDNAPTFDQSVYSVNLRE
NSPVGTLIIQLNATDVDEGQNGEIVYSFSSHNAPRIKDLFDIDARTGRIEVAGEVDFEES
NTHQIYVQAKDLGANAVPAHCKVLVKLVDVNDNTPEIGFSTVTESVSEQDAPGTVIALFS
VSDRDSGENGHMSCEILGDVPFKLKSSFKNYYTIVTDGPLDRENTDSYTITVVAKDKGQP
SLATSKSIKVHVSDENDNAPRFTQAVYDVYVTENNVPGAFIHAVSALDPDVGQNALITYS
ILECDIQGMSVDTYVSINQDTGYLYALRSFDYEQLKEFGFMVQAKDSGAAELFSNTTVNV
IIVDQNDNAPTVIAPIGKNGTAKEHLPRSAEPGYLVTRIVAMDADDGENARLSYSILRGN
EMGMFRMDWRTGELRTARRISPKRDPQGFYDLLIEVRDHGQPPLSSSASVSVMLVDSVVE
GRSGDRGSASKAKETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKKLNLYTCLLSG
DCCLCCSSCCSRHARGRKQKKLSKSDIMLVQSTNVTSGVGPVGQVPVEESGVGGVGGGFG
SHHHQNQNSYCYQVCLTPESAKTDLMFLKPCSPSRSTDTDHTNPCGAIVTGYSDQQPDII
SNGTILSNETKHQRAELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATNR
GHSAGADLFSNCTEECKALGHSDRCWMPSFVPSDGRQGPDYRSNLHVPGMDATLPDTEVP
SSVDLSDQLTMTSTTASSTDRSFSTFGKDGQRSQSHHSLHHHLHQQQQQYSSSTLERKEY
DRGTLPYKPTFLCEYQYESSLGPYDFGLVQYRY
NT seq 3162 nt   +upstreamnt  +downstreamnt
atgatttggttactattcctgctctccatcctggatggagcggtctctcagctgcactac
tccgtgccagaggagcaggaacctggctctgtggttgggaatattgcagaggatttgggg
ctggacattaccaaactttccgctcgccgctttcagacggtgcctagttcacggacacct
tatctggaggtgaacttagagaacggagcactcgtggtgaaggaaaaaattgaccgagaa
gaaatctgtaagcagaccatcccgtgcctattgcacctggaggtgtttctggagaaccca
ctggagctctttcgcgtggagatcgaggtgatggatatcaacgacaatccacccagcttt
cccgagacggacatttccgtggagatatcggagagcgccatccccgggacccgtttccct
gtggagaatgcctttgaccctgacgtaggcacaaacgcgctcagcacatatgccataacg
aataataactatttttaccttgacgtgcagacgcagagcgacgggaacaagttcgcagag
ctggtgctggagaagccgctggaccgggagcagcaggcggtgcaccgctatgtgctgacg
gctgtggatggcggcatcccgcagcggaccgggacggctctcctggtcgttaaagttctc
gactctaatgacaacgcgcccacctttgaccagtctgtgtactctgttaacctgcgggaa
aactctccggtgggcactctgatcattcagctcaacgccacggatgtggacgagggacag
aacggggaaatcgtttattctttcagcagtcataacgcgccgcggataaaggacttattc
gacattgacgccagaacaggtaggatcgaggtggcgggtgaggtggactttgaagagagc
aacacgcatcagatttatgtccaagctaaggatttgggggcgaatgcggtccccgcgcac
tgtaaagtgctggtcaaactcgtagacgtgaacgacaacacaccagagatcgggttcagt
actgtgactgaatccgtgagcgagcaggacgccccgggcaccgtgatcgcactttttagc
gtctcagaccgggactctggtgagaatggacacatgagctgcgagatactgggagacgtt
cctttcaagctgaagtcgtcttttaaaaactactacaccatcgtgacagacggaccgctg
gacagagagaacacagactcctacacaataaccgtggtggccaaagataagggtcagcct
tcgctcgccaccagcaagtccattaaagtgcacgtctccgatgagaatgacaatgcgcct
cgttttacgcaggctgtttacgatgtttatgtgactgagaataatgtgcccggtgctttc
attcacgccgtgagtgctctggaccccgatgtaggacaaaacgctcttattacctactcc
atattggagtgtgacatacagggcatgtctgtagacacgtatgtgtccataaaccaggac
accggctacctttacgcgctacgctcttttgattacgagcagctgaaggagtttggcttc
atggtccaggcgaaagactctggtgcggcggagctattctctaataccactgtaaatgtg
atcatagttgaccaaaatgacaacgctcccaccgtcatagcccccatcggaaaaaacggc
acagccaaagagcacctgccgcgctctgcggagcccggctacttggtgacgcgcatcgtg
gctatggatgcggatgatggcgagaacgcacggctgtcctacagcatcctgcggggcaac
gagatggggatgttccgcatggactggaggacaggggagctgaggacagcccgtaggatc
tctcctaagcgtgacccgcagggcttctacgacctgctgatcgaagtcagggaccacggg
cagccccccctctcctcctccgcgagtgtgagtgtgatgttagtggacagcgtggtcgaa
ggccgtagtggggatcgaggatcggcctccaaggcaaaggagacctcccttgacctcacc
ctaattctcattatcgccttgggctccgtgtctttcatcttcctcctggctatgatcgtg
ctggccgtgcgctgccaaaaggacaagaagctcaacctgtacacgtgcctgctctccggt
gactgctgcctgtgctgtagctcgtgctgtagcaggcatgctcgagggcggaaacagaag
aagcttagtaaatctgacatcatgttagttcagagcaccaacgtgacgtcaggggtcggg
ccagtggggcaggtgcccgtggaggagtccggtgtgggcggagtgggagggggcttcggc
tcccaccaccaccagaaccagaactcctactgctaccaggtgtgtctgacaccggagtcc
gccaaaacggatctgatgttcctcaaaccgtgcagcccctcccgcagcactgacacggat
cacaccaacccctgcggcgccattgtcacgggttacagtgaccaacaaccggacatcata
tccaatggcactattctgtctaacgagacaaaacaccaacgagcagaactcagctatctg
gtggacagacccagacgtgtcaacagctcggcattccaagaggcagacatcgttagctcc
aaagacagtggtcacggtgacagtgaacagggcgacagtgaccacgatgccaccaaccgg
ggtcattcagccggcgctgacctgttctccaactgcacggaggagtgcaaggccctgggc
cactccgaccgctgctggatgccatcctttgtgccatccgacgggcggcagggcccggac
taccgcagcaacctacacgtccccggcatggatgccaccctgcccgacactgaggtaccc
tcctccgtcgacctctccgaccaactgaccatgacctcaaccactgcctcgtccaccgat
aggtcattctccacctttggcaaggatggtcaaaggtcacagtcacaccacagccttcac
catcacctccatcagcaacagcagcagtacagctccagcacgctagagaggaaagagtat
gatagggggaccctaccgtacaaacctacctttctctgtgagtatcagtatgaaagttca
ctgggaccctatgacttcggtctggtccagtacagatactag

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