Cyclopterus lumpus (lumpfish): 117729216
Help
Entry
117729216 CDS
T09199
Name
(RefSeq) LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117729216
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
clum04812
]
117729216
Cytoskeleton proteins [BR:
clum04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
117729216
Intermediate filaments
Intermediate filament-binding proteins
117729216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PMC2NT
CAMSAP_CH
PH_11
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
117729216
NCBI-ProteinID:
XP_034385975
Ensembl:
ENSCLMG00005008816
LinkDB
All DBs
Position
1:26907826..26961944
Genome browser
AA seq
2348 aa
AA seq
DB search
MTKVAADFDHMELQQQYSSNDTVNNRWDEEWDNENSSARLFERSRIKALADEREAVQKKT
FTKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGEKLPKPTKGRMRIHCLENVDKA
LQFLKEQRVHLENMGCHDIVDGNHRLTLGLIWTIILRFQIQDIRVETEDNKEKRSAKDAL
LLWCQMKTAGYSNVNIRNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHHNLQNAFN
LAEQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIE
TEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPRSQNLR
FTEKGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRMELI
RQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYE
ERVSAXVSVAKELEVEHYHDIKRITARKDNVIRLWEYLLELLKARRQRLEMNLGLQRVFQ
EMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADISIQADRVKAVSTNATKYS
VNDDGYKPCDPQVIQDRVSHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIR
EKEQILSSVEHGKDLTGVLRLLSQHRALEDEMSGRAGHLKHTIAEGQAMVQTDHFATTKI
QQRINDLQAQWAALEQLAAVRRKRLEEALALHQFQADADDVDAWTLDALRIVSSGETGHD
EFSTQALFRKHKDAAAEVASYRPVIDSLHEQAALLPQEEAESEEVHGRLAGIEERHKEVT
ELTKLRKQALHDALALYKMFSEANACEVWIDEKEQWLNSMEIPEKLEDLEVVQHRFESLE
PEMNNQASRVAVVNQIARQLMHNGHPSEKNIKTQQDKLNNRWSQFRDLLDQKKESLNSAL
GVQNYHLDCNETKSWIKEKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDL
RGEAQRLAEEHPDQAKAITGRLAEITAVWEEMKNTLKNREESLGEARKLQQFLRELDDFQ
SWLSRTQTAIASEDMPNTLAEAEKLMAQHEGIKNEIQNYEEDYQKMRDMGEMVTQGQTDA
QYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHTYQLFLRDTKQAEAFLNNQEYVLAHT
EMPTTLQGAEAGIKKQEDFMTTMDANEDKINGVVEAGRRLASNGNINAERIQERVASIDD
RHKKNREAAVELLMRLKDNRDLQKFLQDCQELSLWISEKMLTAQDMTYDEARNLHSKWLK
HQAFMAELQANKEWLDKIQKDGMLLVSEKPETETVVKEKMAVLHAMWEELESTTQTKAQC
LFDANKAELFTQSCADLDKWMGGLEGQIQSEDHGKDLTSVNILLKKQQMLEKQVEVRQKE
VVELQTQVKALGQEVTDTEEVDGRRQLVEMKFXELLEPLRRRKNFLVESREVHQFNRDVE
DEILWVQERMAIATSSDHGHNLQTVQLLIKKNQTLQKEVQGHQPRIDDILQRSQSLLKEE
IRQRLLDLQQLWRRLMEEAELRHSRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAK
DELSAVTMQKKHQIVEQSVEDYAETVHQLSKTSRGLVADGHPESERISMRQSQVDKLYAG
LKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFRE
FARDTGNIGQERVDAVNRLADELINAGHGDAATVAEWKDGLNEAWADLLELIDTRTQILA
ASFELHKFYQDAKEILGRILDKQKKLPEDVGRDQNTVETLQRMHTTFEHDIQALGTQVRQ
LQEDAVRLQSAYAGDKADDIQRRESEVLEAWRGLLEACDGRRLRLLDTGDKFRFFSMVRD
LMLWMDDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLARKH
YASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSG
REVGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRLQEEEERMRRPPT
PEPVIVQQEEEAQQQSGLVAQNGPPWDQDSPRDGVDGGDPVNGVGERSSKEPSPGASPTS
GRKSKTSQSSTLPSKNQDSGSSSQLEGLLHRKHEWEAPNKKASNRSWHNVYCVINNQEVG
FYKDSKAAAQGVQYHNQVPVSLRDAACDVASDYKKKKHVFKLRVTDGNEFLFQAKDEDEM
STWIQAILNASADRSEVQGSSPGTPVSGRAQTLPAAVTLVTESSPGKREKDKEKDKEKRF
SLFSKKKQ
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaggtggccgccgatttcgaccacatggagctgcagcagcagtacagcagcaac
gacacggtgaacaaccgctgggacgaagaatgggacaacgagaacagctcggcccgtctc
ttcgaacgctcccgcatcaaggcgctggcagatgagcgggaggcggtccagaagaagacc
ttcaccaagtgggtgaactctcacctgtccagagtctcctgtaggatcacagacctctac
atggacctgagggacggacgcatgctcatcaagctgctggaggtgctgtcaggggagaag
ctgccgaagcccaccaaaggccggatgcgtatccactgcctggagaatgtggacaaagct
ctgcagttcctgaaggagcagagggttcacctggagaacatgggatgtcacgacattgtg
gacgggaaccaccgcctgacgctgggcctcatctggactatcatcctgcgcttccagatc
caggacatcagggtggagactgaagacaacaaagagaagagatcagctaaagacgctctg
ctgctctggtgtcagatgaagacggccggatattccaacgtgaacatccgcaacttcagc
accagctggagagacggcatggccttcaatgctctgatccacaaacacagacccgatctg
attgattttgacaaactgaagaagtccaacgctcaccacaacctgcagaacgccttcaac
ctggcggagcaacacctcggcctcaccaagctgctggatccagaggatatcagcgttgac
catcctgatgagaagtccgtcatcacctacgtggtgacgtattaccactacttctccaag
atgaaagctctgaaggtggagggcaaacgcatcggaaaggtgttggataacgccatcgag
acggagaagatgatcgagaagtacgagtctctggcctcagacctgctggagtggatcgaa
cagaccatcatcatcctcaacaacaggaagttcgccaactctctggtcggagtccagcag
cagcttcaagccttcaacacctaccgaacagtggagaaaccccgaagtcagaaccttcgg
ttcacagagaagggaaacctggaggttcttctgttcaccatccagagtaagatgagagcc
aacaaccagaaggtctacatgccccgagagggaaagctcatctcggatatcaacaaggcc
tgggagcgactggagaaggcagagcatgagagggagctggctctgaggatggagctgatt
cgtcaggagaaactggaacaactcgccagacgcttcgaccgcaaggcggccatgagagag
acctggctcagtgagaaccagaggctggtgtcgcaggacaactttgggtttgaccttcag
gccgtcgaggcggccaccaagaagcacgaggcaatagagacggacatcgcagcgtacgag
gagcgtgtctcggccngtgtctctgtggccaaggagctggaggtggagcactaccacgac
atcaaacgcatcacggccaggaaggacaacgtgatccggctgtgggagtacctgctggag
ctgctgaaggcccgcagacagagactggagatgaacctgggcctgcagagagtcttccag
gagatgctctacatcatggactggatggacgagatgaagatgttgctgctgtctcaggat
tatgggaaacatctattgggtgtggaggacctgcttcagaaacacgccctggtggaggct
gacatctctatccaggctgaccgggtgaaggcagtcagcaccaacgctaccaagtactcc
gtcaacgatgacggctacaagccctgcgaccctcaggtcatccaggaccgggtctctcac
ctggagttctgctaccaggagctgacccagctggccgctgagcgccgcgcccgcctggag
gagtcccgccgtctttggaagttcttctgggagatggctgaagaggaaggctggatccgt
gagaaggagcagatcctgtcctctgtcgagcacggcaaggacctgacgggggtgcttcgc
ctcctcagccagcaccgcgccctagaggatgagatgagcggccgcgctggccaccttaag
cacaccattgcagagggccaggctatggtgcagaccgaccacttcgccaccaccaagatc
cagcagcgtatcaacgaccttcaggctcagtgggcggcgctggagcagctggcagcggtg
agaaggaagaggctggaggaggctctggcactacaccagttccaggccgatgcagatgat
gttgacgcctggacgctggatgccctgcgaatcgtctccagcggagagacgggccatgat
gaattctccacccaggctctcttcaggaagcacaaggatgcagcagcggaggtggccagc
tacagaccggtcattgactcactccacgagcaggctgccttactgcctcaagaggaggcc
gagtcagaggaggtgcatggacgtctggccggcatcgaggaacgccacaaggaggtgaca
gagctgacaaagctgaggaagcaggcgctgcacgatgctctggcactctacaagatgttc
agcgaggccaacgcctgtgaggtttggatcgacgagaaggagcagtggctaaacagcatg
gagatcccagagaaactggaggaccttgaagtcgtacagcacaggtttgagagtctggag
ccggagatgaacaaccaggcatctcgtgttgctgtggtaaaccagatcgcccggcagctg
atgcacaatggtcacccgagtgaaaagaacatcaaaacccagcaggacaaactcaacaac
aggtggagccagttccgagatctgttggaccagaagaaagagtccctgaactcggcgctg
ggtgtgcagaactaccacctcgactgcaacgagacaaagtcctggatcaaagagaagacc
aaagtcatcgagtccacccaggagctgggcaatgacctcactggggtcatggctctgcag
cgcaaactgaccggtatggagcgtgacctggctgccatcgaggacaaactgggcgatctg
cgaggcgaggcccagcggctggcagaggagcaccccgaccaggcaaaggccatcacaggc
cgcctggctgagatcaccgccgtctgggaagaaatgaagaacactctgaagaaccgcgag
gagtcgctgggcgaggccaggaagctacagcagttcttgcgcgagctggatgacttccag
tcgtggctgtctcgcactcagacagccattgcctccgaggacatgcccaacactctggct
gaggccgagaagctcatggcccagcacgaaggcataaagaacgagatccagaactacgaa
gaggactaccagaagatgcgggacatgggggaaatggtgacacagggccagacggacgcg
cagtacatgttccttcgacagaggctacaggcactcgacaccggctggaacgaactgcac
aagatgtgggagaaccgacagaacctgctgtcccagtctcatacctaccagctgttcctc
agggacaccaagcaggctgaggccttcctcaacaaccaggagtacgtcctcgctcacact
gagatgcccaccactctccagggagcagaggccggaatcaagaagcaggaggacttcatg
accaccatggacgccaacgaagacaagatcaatggcgtggtggaggccggcaggcggctg
gccagcaacggaaacatcaacgccgagcgcatccaggagagagtggcctccatcgacgac
agacacaagaagaaccgggaggctgcggtggagctgctgatgagactgaaggacaacaga
gatctgcagaagttcctgcaggactgccaggagctgtctctgtggatcagtgagaagatg
ctcacggcccaggacatgacctacgacgaggccaggaacttgcacagcaagtggctgaag
catcaggccttcatggccgagctgcaggccaacaaagagtggctggacaagatccagaag
gacgggatgctgctggtgtcggagaagccggagacggagacggtggtgaaggagaagatg
gcggtgctgcacgccatgtgggaggagctagagtcgaccacgcagacgaaggctcagtgt
ctgttcgacgccaacaaggccgagctgtttacgcagagctgcgccgacctcgacaagtgg
atggggggcctggagggtcagatccagtccgaggaccatggcaaagacctgacctccgtc
aacatcctgctgaagaaacagcagatgctggagaagcaggtggaggtgcggcagaaggag
gtggtggagctgcagacccaggtgaaggctctggggcaggaggtgacggacacggaggag
gtggacgggcggaggcagctggtggagatgaagttcnaggagctgctggagccgcttcgc
cggcgcaagaacttcctggtggagtcgagagaagttcaccagttcaaccgagacgtggag
gacgagatcctgtgggttcaggagaggatggccatcgccacgtcctctgaccatggacac
aacctgcagacggtccagctactcatcaagaagaaccagaccctgcagaaggaggtccag
ggccaccagccccgtatagatgacatcctgcagcgcagtcagagcctcctgaaggaggag
atccggcagcgcctgctggacctgcagcagctgtggaggcggctgatggaggaggcggag
cttcggcacagccggctggaggaggcgcataaagcccagcagtactacttcgacgccgcc
gaggccgaggcctggatgagcgagcaggagctgtacatgatgtcagaggagaaggccaag
gacgagctgagcgccgtcaccatgcagaagaagcaccagatcgtggagcagtcggtggag
gactacgccgagaccgtccaccagctgtccaagaccagcagaggactggtggcagacggg
caccctgagagtgagagaatcagcatgcgtcaatctcaggtggataaattgtacgctggc
ctgaaggacctatcagaggagaggcggggcaaactggacgagaggctccgcctcttccag
ctgaaccgggaggtggacgacctcgagcagtggattgcagagcgggaggtggtggccggg
tcgcatgagctgggccaggactacgagcacgtgactatgttgcaggagcgtttccgtgag
tttgctcgggacactggaaacatcggtcaagagcgcgtggacgccgtcaaccgtctggcg
gacgagctgatcaacgccggccacggcgacgcggccacggtggcggagtggaaggacggg
ctgaacgaggcctgggccgacctgctggagctcatcgacacccggacgcagatcctcgcc
gcctccttcgagctccacaagttctaccaggacgccaaggagatcctgggccgcatcctg
gacaaacaaaagaagctgccggaggacgtcggccgcgaccagaacacggtggagacgctc
cagaggatgcacaccaccttcgaacacgacatccaagccctggggacgcaggtgaggcag
ctgcaggaggacgcggtgcgcctccagtcggcgtatgccggagacaaagccgacgacatc
cagcggagggagagcgaggtgctcgaggcctggaggggtctgctggaggcctgcgacgga
cggaggctccgcctcctcgacaccggagacaagttcaggttcttcagcatggtccgagac
ctcatgctgtggatggacgacgtgatccggctcatcgaggcccaggagaatcccagagac
gtgtcgtcggtggagctgctgatgaacaaccaccaggggatcaaggccgagatcgacgcc
cgcaacgacagcttcacggcctgcatcgagctgggcaagagcctgctggccaggaagcac
tacgcttcagaggagatcaaagagaagctgctgcagctgacggacaagaggaaagagatg
attgacaagtgggaggaccgatgggagtggctacgactcatcctggaggtgcaccagttc
tccagggatgccggggtggcggaggcgtggcttctgggccaggagccctacctgtctggg
agggaggtgggtcagagcgtggacgaggtggagaagctcatcaaacgccacgaggccttc
gagaagtccgccgccacctgggaggagcgcttctctgccctggagaggctgaccacgctg
gagctgctggaggtgaggaggctgcaggaggaagaggagaggatgaggaggcccccgact
ccagagccggttatcgttcagcaggaggaggaagcccagcagcagagtggactcgtggct
cagaacggacccccatgggaccaggactctcctcgggacggcgtggacggcggtgatccg
gtgaacggtgtcggcgagcggagctccaaggagccgagccccggcgcctccccgacctct
ggcaggaagagtaagaccagccagtcgtccacgctgccctccaagaaccaggactcgggc
tcctcctcacagctggagggcctcctgcaccgcaaacacgagtgggaggccccaaacaag
aaggcctccaacaggtcgtggcacaacgtgtattgcgtcatcaacaaccaggaggtgggt
ttctacaaagacagcaaggcggcggctcagggggtccagtaccacaaccaggtccccgtg
agcctgagggacgccgcctgtgacgtggcgtcggactacaagaagaagaagcacgtcttc
aaactccgagtcacggatggaaacgagtttctgtttcaagccaaagatgaagacgagatg
agcacctggatccaggccatcctgaacgccagcgccgaccgctccgaggtgcagggcagc
agccccggcacgccggtgtccgggcgcgctcagacgctgccggccgccgtcacgctcgtc
accgagtcgagtcccggcaagagagagaaggacaaagagaaggacaaggagaaacgcttc
agtctgttcagcaagaagaaacagtag
DBGET
integrated database retrieval system
