Cyclopterus lumpus (lumpfish): 117729216
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Entry
117729216 CDS
T09199
Name
(RefSeq) LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04517
IgSF CAM signaling
clum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117729216
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117729216
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
clum04812
]
117729216
Cytoskeleton proteins [BR:
clum04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
117729216
Intermediate filaments
Intermediate filament-binding proteins
117729216
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PMC2NT
CAMSAP_CH
SCAR_helical
SOS1_NGEF_PH
FERM_C1_MyoVII
PH_11
Motif
Other DBs
NCBI-GeneID:
117729216
NCBI-ProteinID:
XP_034385975
Ensembl:
ENSCLMG00005008816
LinkDB
All DBs
Position
1
Genome browser
AA seq
2348 aa
AA seq
DB search
MTKVAADFDHMELQQQYSSNDTVNNRWDEEWDNENSSARLFERSRIKALADEREAVQKKT
FTKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGEKLPKPTKGRMRIHCLENVDKA
LQFLKEQRVHLENMGCHDIVDGNHRLTLGLIWTIILRFQIQDIRVETEDNKEKRSAKDAL
LLWCQMKTAGYSNVNIRNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHHNLQNAFN
LAEQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIE
TEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPRSQNLR
FTEKGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRMELI
RQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYE
ERVSAXVSVAKELEVEHYHDIKRITARKDNVIRLWEYLLELLKARRQRLEMNLGLQRVFQ
EMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADISIQADRVKAVSTNATKYS
VNDDGYKPCDPQVIQDRVSHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIR
EKEQILSSVEHGKDLTGVLRLLSQHRALEDEMSGRAGHLKHTIAEGQAMVQTDHFATTKI
QQRINDLQAQWAALEQLAAVRRKRLEEALALHQFQADADDVDAWTLDALRIVSSGETGHD
EFSTQALFRKHKDAAAEVASYRPVIDSLHEQAALLPQEEAESEEVHGRLAGIEERHKEVT
ELTKLRKQALHDALALYKMFSEANACEVWIDEKEQWLNSMEIPEKLEDLEVVQHRFESLE
PEMNNQASRVAVVNQIARQLMHNGHPSEKNIKTQQDKLNNRWSQFRDLLDQKKESLNSAL
GVQNYHLDCNETKSWIKEKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDL
RGEAQRLAEEHPDQAKAITGRLAEITAVWEEMKNTLKNREESLGEARKLQQFLRELDDFQ
SWLSRTQTAIASEDMPNTLAEAEKLMAQHEGIKNEIQNYEEDYQKMRDMGEMVTQGQTDA
QYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHTYQLFLRDTKQAEAFLNNQEYVLAHT
EMPTTLQGAEAGIKKQEDFMTTMDANEDKINGVVEAGRRLASNGNINAERIQERVASIDD
RHKKNREAAVELLMRLKDNRDLQKFLQDCQELSLWISEKMLTAQDMTYDEARNLHSKWLK
HQAFMAELQANKEWLDKIQKDGMLLVSEKPETETVVKEKMAVLHAMWEELESTTQTKAQC
LFDANKAELFTQSCADLDKWMGGLEGQIQSEDHGKDLTSVNILLKKQQMLEKQVEVRQKE
VVELQTQVKALGQEVTDTEEVDGRRQLVEMKFXELLEPLRRRKNFLVESREVHQFNRDVE
DEILWVQERMAIATSSDHGHNLQTVQLLIKKNQTLQKEVQGHQPRIDDILQRSQSLLKEE
IRQRLLDLQQLWRRLMEEAELRHSRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAK
DELSAVTMQKKHQIVEQSVEDYAETVHQLSKTSRGLVADGHPESERISMRQSQVDKLYAG
LKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFRE
FARDTGNIGQERVDAVNRLADELINAGHGDAATVAEWKDGLNEAWADLLELIDTRTQILA
ASFELHKFYQDAKEILGRILDKQKKLPEDVGRDQNTVETLQRMHTTFEHDIQALGTQVRQ
LQEDAVRLQSAYAGDKADDIQRRESEVLEAWRGLLEACDGRRLRLLDTGDKFRFFSMVRD
LMLWMDDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLARKH
YASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSG
REVGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRLQEEEERMRRPPT
PEPVIVQQEEEAQQQSGLVAQNGPPWDQDSPRDGVDGGDPVNGVGERSSKEPSPGASPTS
GRKSKTSQSSTLPSKNQDSGSSSQLEGLLHRKHEWEAPNKKASNRSWHNVYCVINNQEVG
FYKDSKAAAQGVQYHNQVPVSLRDAACDVASDYKKKKHVFKLRVTDGNEFLFQAKDEDEM
STWIQAILNASADRSEVQGSSPGTPVSGRAQTLPAAVTLVTESSPGKREKDKEKDKEKRF
SLFSKKKQ
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaggtggccgccgatttcgaccacatggagctgcagcagcagtacagcagcaac
gacacggtgaacaaccgctgggacgaagaatgggacaacgagaacagctcggcccgtctc
ttcgaacgctcccgcatcaaggcgctggcagatgagcgggaggcggtccagaagaagacc
ttcaccaagtgggtgaactctcacctgtccagagtctcctgtaggatcacagacctctac
atggacctgagggacggacgcatgctcatcaagctgctggaggtgctgtcaggggagaag
ctgccgaagcccaccaaaggccggatgcgtatccactgcctggagaatgtggacaaagct
ctgcagttcctgaaggagcagagggttcacctggagaacatgggatgtcacgacattgtg
gacgggaaccaccgcctgacgctgggcctcatctggactatcatcctgcgcttccagatc
caggacatcagggtggagactgaagacaacaaagagaagagatcagctaaagacgctctg
ctgctctggtgtcagatgaagacggccggatattccaacgtgaacatccgcaacttcagc
accagctggagagacggcatggccttcaatgctctgatccacaaacacagacccgatctg
attgattttgacaaactgaagaagtccaacgctcaccacaacctgcagaacgccttcaac
ctggcggagcaacacctcggcctcaccaagctgctggatccagaggatatcagcgttgac
catcctgatgagaagtccgtcatcacctacgtggtgacgtattaccactacttctccaag
atgaaagctctgaaggtggagggcaaacgcatcggaaaggtgttggataacgccatcgag
acggagaagatgatcgagaagtacgagtctctggcctcagacctgctggagtggatcgaa
cagaccatcatcatcctcaacaacaggaagttcgccaactctctggtcggagtccagcag
cagcttcaagccttcaacacctaccgaacagtggagaaaccccgaagtcagaaccttcgg
ttcacagagaagggaaacctggaggttcttctgttcaccatccagagtaagatgagagcc
aacaaccagaaggtctacatgccccgagagggaaagctcatctcggatatcaacaaggcc
tgggagcgactggagaaggcagagcatgagagggagctggctctgaggatggagctgatt
cgtcaggagaaactggaacaactcgccagacgcttcgaccgcaaggcggccatgagagag
acctggctcagtgagaaccagaggctggtgtcgcaggacaactttgggtttgaccttcag
gccgtcgaggcggccaccaagaagcacgaggcaatagagacggacatcgcagcgtacgag
gagcgtgtctcggccngtgtctctgtggccaaggagctggaggtggagcactaccacgac
atcaaacgcatcacggccaggaaggacaacgtgatccggctgtgggagtacctgctggag
ctgctgaaggcccgcagacagagactggagatgaacctgggcctgcagagagtcttccag
gagatgctctacatcatggactggatggacgagatgaagatgttgctgctgtctcaggat
tatgggaaacatctattgggtgtggaggacctgcttcagaaacacgccctggtggaggct
gacatctctatccaggctgaccgggtgaaggcagtcagcaccaacgctaccaagtactcc
gtcaacgatgacggctacaagccctgcgaccctcaggtcatccaggaccgggtctctcac
ctggagttctgctaccaggagctgacccagctggccgctgagcgccgcgcccgcctggag
gagtcccgccgtctttggaagttcttctgggagatggctgaagaggaaggctggatccgt
gagaaggagcagatcctgtcctctgtcgagcacggcaaggacctgacgggggtgcttcgc
ctcctcagccagcaccgcgccctagaggatgagatgagcggccgcgctggccaccttaag
cacaccattgcagagggccaggctatggtgcagaccgaccacttcgccaccaccaagatc
cagcagcgtatcaacgaccttcaggctcagtgggcggcgctggagcagctggcagcggtg
agaaggaagaggctggaggaggctctggcactacaccagttccaggccgatgcagatgat
gttgacgcctggacgctggatgccctgcgaatcgtctccagcggagagacgggccatgat
gaattctccacccaggctctcttcaggaagcacaaggatgcagcagcggaggtggccagc
tacagaccggtcattgactcactccacgagcaggctgccttactgcctcaagaggaggcc
gagtcagaggaggtgcatggacgtctggccggcatcgaggaacgccacaaggaggtgaca
gagctgacaaagctgaggaagcaggcgctgcacgatgctctggcactctacaagatgttc
agcgaggccaacgcctgtgaggtttggatcgacgagaaggagcagtggctaaacagcatg
gagatcccagagaaactggaggaccttgaagtcgtacagcacaggtttgagagtctggag
ccggagatgaacaaccaggcatctcgtgttgctgtggtaaaccagatcgcccggcagctg
atgcacaatggtcacccgagtgaaaagaacatcaaaacccagcaggacaaactcaacaac
aggtggagccagttccgagatctgttggaccagaagaaagagtccctgaactcggcgctg
ggtgtgcagaactaccacctcgactgcaacgagacaaagtcctggatcaaagagaagacc
aaagtcatcgagtccacccaggagctgggcaatgacctcactggggtcatggctctgcag
cgcaaactgaccggtatggagcgtgacctggctgccatcgaggacaaactgggcgatctg
cgaggcgaggcccagcggctggcagaggagcaccccgaccaggcaaaggccatcacaggc
cgcctggctgagatcaccgccgtctgggaagaaatgaagaacactctgaagaaccgcgag
gagtcgctgggcgaggccaggaagctacagcagttcttgcgcgagctggatgacttccag
tcgtggctgtctcgcactcagacagccattgcctccgaggacatgcccaacactctggct
gaggccgagaagctcatggcccagcacgaaggcataaagaacgagatccagaactacgaa
gaggactaccagaagatgcgggacatgggggaaatggtgacacagggccagacggacgcg
cagtacatgttccttcgacagaggctacaggcactcgacaccggctggaacgaactgcac
aagatgtgggagaaccgacagaacctgctgtcccagtctcatacctaccagctgttcctc
agggacaccaagcaggctgaggccttcctcaacaaccaggagtacgtcctcgctcacact
gagatgcccaccactctccagggagcagaggccggaatcaagaagcaggaggacttcatg
accaccatggacgccaacgaagacaagatcaatggcgtggtggaggccggcaggcggctg
gccagcaacggaaacatcaacgccgagcgcatccaggagagagtggcctccatcgacgac
agacacaagaagaaccgggaggctgcggtggagctgctgatgagactgaaggacaacaga
gatctgcagaagttcctgcaggactgccaggagctgtctctgtggatcagtgagaagatg
ctcacggcccaggacatgacctacgacgaggccaggaacttgcacagcaagtggctgaag
catcaggccttcatggccgagctgcaggccaacaaagagtggctggacaagatccagaag
gacgggatgctgctggtgtcggagaagccggagacggagacggtggtgaaggagaagatg
gcggtgctgcacgccatgtgggaggagctagagtcgaccacgcagacgaaggctcagtgt
ctgttcgacgccaacaaggccgagctgtttacgcagagctgcgccgacctcgacaagtgg
atggggggcctggagggtcagatccagtccgaggaccatggcaaagacctgacctccgtc
aacatcctgctgaagaaacagcagatgctggagaagcaggtggaggtgcggcagaaggag
gtggtggagctgcagacccaggtgaaggctctggggcaggaggtgacggacacggaggag
gtggacgggcggaggcagctggtggagatgaagttcnaggagctgctggagccgcttcgc
cggcgcaagaacttcctggtggagtcgagagaagttcaccagttcaaccgagacgtggag
gacgagatcctgtgggttcaggagaggatggccatcgccacgtcctctgaccatggacac
aacctgcagacggtccagctactcatcaagaagaaccagaccctgcagaaggaggtccag
ggccaccagccccgtatagatgacatcctgcagcgcagtcagagcctcctgaaggaggag
atccggcagcgcctgctggacctgcagcagctgtggaggcggctgatggaggaggcggag
cttcggcacagccggctggaggaggcgcataaagcccagcagtactacttcgacgccgcc
gaggccgaggcctggatgagcgagcaggagctgtacatgatgtcagaggagaaggccaag
gacgagctgagcgccgtcaccatgcagaagaagcaccagatcgtggagcagtcggtggag
gactacgccgagaccgtccaccagctgtccaagaccagcagaggactggtggcagacggg
caccctgagagtgagagaatcagcatgcgtcaatctcaggtggataaattgtacgctggc
ctgaaggacctatcagaggagaggcggggcaaactggacgagaggctccgcctcttccag
ctgaaccgggaggtggacgacctcgagcagtggattgcagagcgggaggtggtggccggg
tcgcatgagctgggccaggactacgagcacgtgactatgttgcaggagcgtttccgtgag
tttgctcgggacactggaaacatcggtcaagagcgcgtggacgccgtcaaccgtctggcg
gacgagctgatcaacgccggccacggcgacgcggccacggtggcggagtggaaggacggg
ctgaacgaggcctgggccgacctgctggagctcatcgacacccggacgcagatcctcgcc
gcctccttcgagctccacaagttctaccaggacgccaaggagatcctgggccgcatcctg
gacaaacaaaagaagctgccggaggacgtcggccgcgaccagaacacggtggagacgctc
cagaggatgcacaccaccttcgaacacgacatccaagccctggggacgcaggtgaggcag
ctgcaggaggacgcggtgcgcctccagtcggcgtatgccggagacaaagccgacgacatc
cagcggagggagagcgaggtgctcgaggcctggaggggtctgctggaggcctgcgacgga
cggaggctccgcctcctcgacaccggagacaagttcaggttcttcagcatggtccgagac
ctcatgctgtggatggacgacgtgatccggctcatcgaggcccaggagaatcccagagac
gtgtcgtcggtggagctgctgatgaacaaccaccaggggatcaaggccgagatcgacgcc
cgcaacgacagcttcacggcctgcatcgagctgggcaagagcctgctggccaggaagcac
tacgcttcagaggagatcaaagagaagctgctgcagctgacggacaagaggaaagagatg
attgacaagtgggaggaccgatgggagtggctacgactcatcctggaggtgcaccagttc
tccagggatgccggggtggcggaggcgtggcttctgggccaggagccctacctgtctggg
agggaggtgggtcagagcgtggacgaggtggagaagctcatcaaacgccacgaggccttc
gagaagtccgccgccacctgggaggagcgcttctctgccctggagaggctgaccacgctg
gagctgctggaggtgaggaggctgcaggaggaagaggagaggatgaggaggcccccgact
ccagagccggttatcgttcagcaggaggaggaagcccagcagcagagtggactcgtggct
cagaacggacccccatgggaccaggactctcctcgggacggcgtggacggcggtgatccg
gtgaacggtgtcggcgagcggagctccaaggagccgagccccggcgcctccccgacctct
ggcaggaagagtaagaccagccagtcgtccacgctgccctccaagaaccaggactcgggc
tcctcctcacagctggagggcctcctgcaccgcaaacacgagtgggaggccccaaacaag
aaggcctccaacaggtcgtggcacaacgtgtattgcgtcatcaacaaccaggaggtgggt
ttctacaaagacagcaaggcggcggctcagggggtccagtaccacaaccaggtccccgtg
agcctgagggacgccgcctgtgacgtggcgtcggactacaagaagaagaagcacgtcttc
aaactccgagtcacggatggaaacgagtttctgtttcaagccaaagatgaagacgagatg
agcacctggatccaggccatcctgaacgccagcgccgaccgctccgaggtgcagggcagc
agccccggcacgccggtgtccgggcgcgctcagacgctgccggccgccgtcacgctcgtc
accgagtcgagtcccggcaagagagagaaggacaaagagaaggacaaggagaaacgcttc
agtctgttcagcaagaagaaacagtag
DBGET
integrated database retrieval system
