Cyclopterus lumpus (lumpfish): 117729237
Help
Entry
117729237 CDS
T09199
Symbol
arhgef18b
Name
(RefSeq) rho guanine nucleotide exchange factor 18 isoform X1
KO
K21066
A-kinase anchor protein 18
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
117729237 (arhgef18b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117729237 (arhgef18b)
Membrane trafficking [BR:
clum04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
117729237 (arhgef18b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
PH
C1_1
PH_13
SOS1_NGEF_PH
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
117729237
NCBI-ProteinID:
XP_034386003
LinkDB
All DBs
Position
4:complement(18587251..18637553)
Genome browser
AA seq
1720 aa
AA seq
DB search
MFSAAENEKKEEAGVRSCSWLLALCVSVRGEPDVHTEHRQTRGTENHLVFSPLPCFGEQR
GLTCRHLLPTITPSECKPCSPSAQLSVQPQAPSRTGSSSSSSSLSPASVTEDVFFGSINK
DQDVCSVVSDYDCPCADVSSSLENLLGLSSSLRDSEYFKDLEGGIPAAQLTASTVTTVPE
SKTRTVGLHVPLNSDSPAINQPVQTSLSTHSAHVNALSSSPFYIHPAEGLHQNFVVTQLN
TKLLPGCIIDSGDSSGQAVGLSLTINLNGLLGSMETAKGKTESEEVKEQPAMESDGEPDL
DSFPILVRSMSTSRRHSWGVPVSPIHLGRRLSLDTMAMDSDGEREDDESVFQSSQPQTSS
CTACPGEKTDGSRPRAPCPRARVTSMCFQAGGVPGRHLYSRSEILATDECSRAAHISRVV
QTSKQAARAAGAEEFDPEENLHSTDGHSHIAKERNHRSDSKVSGNVTWYEFLSHENEEEE
DRSEKVEKGTKVKRTLSSLRNRVTGSFNKDKGKNREKEEQKERGKEKEAKEKVCGSRSSN
RHYLVPGAFSSCATCSLCSKTLQRKHGLQCMNCAVNVHKSCKSLLGECTSSRNKRDSSQR
TCSSGSQNIALRDREREHSGLASSHALDGHSGFHSTPGMTISLWGTSTHTTSFTAPSSLG
HSLRHHNSSGSLPGEMDETDALRSKRCNEDAISLAPSTTESIIVEDVHYAAVRADLESDA
QDLEIESWSLAVDQQFVKKHSKEMVKRQDVIYELMQTEMHHVRTLKIMLRVYVQELKENL
QMDSGRLDCLFPRLENLLELHTHFLSRLKERRRENLVSPNDRNYAINRMADILIAQFSGE
IGERMKESYGDFCSHHTEAVGYYKEQLQNNKKFQNIIRKINNLSIVRRLGVTECILLVTQ
RITKYPVLVERILHNTEAGTEEQEDMTRALGLIKDTIVQVDTLVNLHEKNSRLRDIHNKM
EPKALGKIKDGRVFRREDLAQGRRRLLHEGTVNWKAASGRLKDILAVLLSDVLLLLQEKD
QRYAFAAVDNKPSVISLQKLIVREVAHEEKAMFLICASSNEPEMYEIHTTSKEDRNTWMT
HIRQAVESCPHTEERLFSEEEEARAFRFKEFQERLSQKDAVVIQALTEKLQLFADMAESV
AGLEDAASRSRLLLRGDASDLQQGEALLKGAITEVENLQNLLQSGVREEASPSRLEEGSG
SGVLPRRADTFGGYDSSPTILSKNGGVKKNFSGETRNRDRSQRASSDPQLKDLCGSHTLE
QTVDESCCSPARWNRIWSNSFPEAEFFDRVLMLSQRLYSLQAIVSQQDSHIELQRASLTE
RAALPGRHRGNVLLEQEKQRTLALQREELASFHKLQSQHRHEQHRWERERERHHQQVEAT
EARLRQREDECRRLEELLAEERKELESQRETYQQDLERLRESTRAVEKEKERLEHQKKIK
RKTIEVAPLSGSLNGELLMSSGLNTFPSVSDLPLPQKPLVRASLSVAPADYPERPEVMLR
REASSSTLPLKTEVPLHLFSTTNQQHKLVGVQQQIPTKLAAFSCGGKGKGGKIGKASHRT
DSTASVDMKQMLPLKLSARDDNALKAKRSISPHQQLPLSAPPQPLPMHHHTDQLSPPDNA
GPDTQSTSSISISHPQNLQKPPMPPAQSHPQPSMPPPTIPPHSQSTGSLQFQFHLQPQGL
SPNAHAHVQVNAHGLTHSLSMPPPYKVATEDLNKEDVIFF
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagctgcagagaatgagaaaaaagaggaagcaggggtgagatcctgtagctgg
ctgctggctctctgtgtcagtgtgaggggcgagcccgacgttcacacagaacaccgtcag
acccgaggaacggaaaaccatcttgtcttctctcctctaccttgtttcggtgaacagaga
ggactcacatgccgccatctgttacccaccatcacgccttcggagtgcaagccatgtagt
cccagtgcccagctcagcgtccagcctcaggctcccagcaggacgggatcctcctcctcc
tcctcctcactatcccctgcctctgtcactgaggatgtcttctttggtagcatcaataaa
gaccaggatgtgtgttcagtagtcagcgactatgactgcccctgtgcggacgtgagcagc
agtctggagaacctgctgggcctcagctcttccctcagagactcagagtactttaaagac
ctagaaggagggataccggctgcacagttgactgcatccacagtaaccacagtcccagag
agcaaaacccgaactgttggcctccatgtgcccctaaactcggacagtcctgccatcaac
caaccggtgcagacttctttgagcacacactccgctcatgtcaatgcactatcctcttcc
cccttctatatacaccctgcagagggacttcatcaaaactttgtggtcacgcagcttaat
acaaagttattgccaggttgcatcattgacagcggagattcctcaggccaggctgtaggg
ctcagcttgacaattaatctgaatggactgttgggatcaatggaaacagcaaaaggaaaa
acagaatcagaagaagtaaaggagcaaccagctatggagtcagacggagagccagacctg
gacagctttcctattctggtcagatccatgtcaacgtctcggaggcacagctggggtgtc
cctgtgtcccccatccacctggggaggagactgagtctggataccatggccatggacagc
gatggagagagagaggatgatgaaagtgtcttccagtccagccagccgcagacctccagc
tgcacagcatgtcctggagagaagacagacggctccaggccgagggccccctgtccaaga
gccagagtcaccagcatgtgctttcaggccggtggtgtgcctggcaggcatctgtactcc
cgctcagagatcctcgccacagatgaatgttcccgtgctgcgcacatttctcgtgttgtg
cagacatccaaacaggccgcgagggcagcaggagcagaggagtttgaccctgaagaaaac
ttacattctactgacggacacagccatatagcgaaggagaggaaccacagatcagacagc
aaagtgtcaggaaacgtcacttggtacgagttcctctctcatgagaatgaagaggaggag
gatcgttcagagaaggtggagaaaggcaccaaggtgaagaggactctcagctctctgagg
aacagggtgactggctccttcaataaagataagggtaagaaccgagaaaaagaggagcag
aaagagagggggaaggagaaggaggctaaagagaaagtgtgtggcagcagaagcagcaat
aggcattatttggtgccaggcgccttctccagctgtgccacctgctcgctgtgcagcaag
accctgcagagaaagcatggcctgcagtgcatgaattgtgctgtgaacgttcacaagagc
tgcaagtctctgctgggtgagtgcaccagcagcaggaataagagagattcttcgcagagg
acttgctcatcgggatctcagaatattgcgctcagagacagagagcgggagcattcgggc
ctagcctcatcacatgccctggatggccactcaggatttcatagcaccccaggcatgacc
atcagtttgtggggaacaagcacacataccaccagcttcaccgcaccttccagccttggc
cacagcctccgtcaccataacagctcaggatccctccctggggagatggatgagacggat
gctctccgctccaaacgctgcaacgaagacgccatttccctcgcgccctcgaccaccgag
tccatcattgttgaagatgttcactatgcagcagtgcgggctgatctggagtctgatgcc
caggacctggagatagagtcatggagtttggcggttgaccagcagtttgttaagaagcac
tctaaagaaatggtgaagcgacaggatgtgatttatgagctcatgcagacagagatgcac
catgtgcgaacactgaagataatgctgcgcgtgtacgtccaagagttgaaggagaacctc
cagatggactctggcaggctagactgtctgttcccccgtttggaaaacctcctcgagctt
cacacacatttcctgtctcgtctcaaagagaggcggcgtgaaaaccttgtttcgcccaac
gacaggaactacgctatcaacagaatggccgacattctgattgcacagttctcaggtgag
ataggagaaaggatgaaggaaagttatggagatttctgcagtcaccacacggaggctgtt
ggctactacaaagaacagctgcaaaacaacaaaaaattccaaaacatcatacggaaaatc
aacaacctctccattgtgcggaggttaggagtgactgagtgcattctgttggtgacgcag
cgcatcaccaagtacccagtactagtggagcgcattctgcacaacactgaagcgggtaca
gaggagcaggaggatatgactcgggcgctgggtctgattaaagacaccatcgttcaggtt
gacacgctggttaatctccatgagaagaactctcggctccgagacatacacaacaagatg
gagccaaaggcactgggaaagatcaaagatggccgagtgtttcgcagggaggacttggcg
cagggcaggaggcgtttgctgcatgagggcacagtcaactggaaagctgcttctggcagg
ctcaaagatattcttgcagtgcttctatcagatgtgctgctcttgctacaagagaaggat
caaagatatgcatttgctgcagtggataacaagccgtcagtgatctcccttcagaagctg
attgtcagggaagtggcccatgaggagaaagccatgtttcttatctgcgcctcctccaat
gagccagagatgtacgagatccacaccacctccaaggaggaccgaaacacttggatgaca
cacatacgccaagctgttgagagctgtcctcatacagaagagaggctgttcagtgaggag
gaagaggcccgagctttcaggttcaaagaatttcaagaacggctgagccagaaggatgca
gtggtcatccaggctcttactgagaagttgcagctgtttgccgacatggcagagtctgtg
gcaggtctagaggacgcagcttcccgttccagacttctgcttcgaggagacgcctcagac
ctccagcagggggaggccctgctcaaaggagctatcactgaggtggagaacctccagaac
ctgctgcagtctggagtgagggaggaggcttcaccctcccggctggaggaggggagcggt
tctggggttctgcccaggcgagcagataccttcgggggctatgacagcagccccaccatc
ctcagtaagaatggcggtgtgaagaagaacttttctggcgagaccagaaacagagataga
agccagagagccagctctgaccctcagctcaaagacctctgtggcagccacaccctggag
cagacggttgatgagagctgctgctctcctgccagatggaaccgcatctggtccaactca
ttccccgaggctgagttctttgacagagtgctgatgctctcccaaaggctctatagtctg
caggccatcgtttcacagcaggacagccacatcgagctgcagcgggcctcgttgacggag
cgggccgccctgcccggccgccacagagggaacgtgctcctggagcaggagaaacagcgg
actctggccctgcagagagaggagctggccagcttccacaagctgcagtctcagcaccgg
catgagcagcaccgctgggagagggagagggagaggcaccaccaacaagtcgaggccacc
gaggccaggctccggcaaagggaggacgagtgcagacggctggaggagcttctggcagaa
gagaggaaggagctggagagtcagagggagacgtaccagcaggacctggagaggctgaga
gagtccaccagagctgtggagaaggaaaaggaacgtctggaacaccagaagaagatcaag
agaaagactattgaggtggctcctttatctggcagcctgaacggggagctcctcatgtct
tcgggcctcaacaccttccccagtgtctccgacctgcccctccctcagaagcccctggtg
cgggccagcctctctgtcgcaccagccgactatccagagcgccctgaagtgatgttgcgg
cgggaggcgagctcttccaccctgccgctgaagacggaggtgccgctccatctcttcagc
accaccaaccagcagcacaaactggtgggggtgcagcagcagatccccaccaagctggcc
gccttcagctgcggcggcaaagggaaaggaggcaagattggcaaagcctcacatcgcact
gacagcacggcctcagttgatatgaagcagatgctgccgctgaagctgtccgcccgggat
gacaacgccctcaaggccaagcgttccatcagcccccaccagcagctcccgctgtcagcc
cctcctcagcctcttcccatgcatcatcacacagatcaactcagtcctccagacaatgct
gggccagacacccagtccacctcctccatcagcatctcccaccctcagaatcttcagaag
cctcccatgcctcctgcacagtcccatcctcagccctccatgcctcctcccaccatcccc
ccccactcacagagcaccggctccctccagttccagttccatctgcaaccgcagggcctc
agtccgaacgcccacgcccatgtgcaggtaaacgctcacgggctcacccacagcctcagc
atgccaccaccttacaaggttgccacagaagacctcaataaggaggacgtcatcttcttc
taa
DBGET
integrated database retrieval system
