KEGG   Cyclopterus lumpus (lumpfish): 117729252
Entry
117729252         CDS       T09199                                 
Symbol
kdm4c
Name
(RefSeq) lysine-specific demethylase 4C isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
clum  Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:clum00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:clum03036]
    117729252 (kdm4c)
Enzymes [BR:clum01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     117729252 (kdm4c)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     117729252 (kdm4c)
Chromosome and associated proteins [BR:clum03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    117729252 (kdm4c)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 PHD_2 zf-HC5HC2H JmjN PHD Tudor_5 Rad9_Rad53_bind BSP_II
Other DBs
NCBI-GeneID: 117729252
NCBI-ProteinID: XP_034386051
Ensembl: ENSCLMG00005001264
LinkDB
Position
1:complement(5006241..5033309)
AA seq 1677 aa
MAGAEVYTPANPTCKIMTFRPTMEEFKDFNQYLVYMESQGAHRAGLAKVIPPKGWKPRRT
YDDIDDLMIDAPIQQMMAGQSGLFTQYNIQKKPLNVQEFRRLANSDMYCTPRYLNYEDLE
RKYWKNLTFVSPIYGADVSGSLYDEDVEEWNIGHLNSILDVIEEDSGVSIQGVNTPYLYF
GMWKTTFSWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLATGFFPNSFKGCEAFL
RHKMTLISPSILKKYGIPFDKITQEAGEFMVTFPYGYHAGFNHGFNCAESTNFATVRWID
YGKVATQCTCSKDMVKISMEPFVKRFQPDRYTNWMGGKDSAPPDHILATPSTTPELQSWL
QRRRKNKPTNKGCTHSRMRSKRLRTTEEPIGLNGSSALTSSKRKGLGSPPGPKVRRIVAG
TSCREEEEEEEEEVEEKKKEKGAELKHNQNSVLSGPCRQMCVVKVNRVESNSLGFLNKEP
SQNSRCSAIPSPVSAVKKDLKAETGRHTDPQRLSGSGVVCRTPEGLRQWPEATQTHPGII
EARCCSHEQRDLSSAQDCSTRVSPLEANTLCPSSHTTSTSTETETSLRPSDSEVQTASAS
CREDTLSLTPNTDISMGSGTEDYADSPAEAEKMDAVVHTKRITSHSTTEALYDLKTEPVG
GDSSTSCGSFSPAAHNCSLEKNRTEENIFPPLLQRNAVDMPRLTPEPADKVGICPLPPVL
IQEMPSLTPADDGLTIVPKASTCSHQVAPVLQRETPTNSPASHRAKQEEGETDSMMSKEP
LAAEPANKWHLDSPYNCDAAAVSGLEGNVAHLTTSALHKITSGGVQEMLIMPGMAAEKDH
TKLENVTPGRTDASSNQQVQSTAPQTGQQYGLAGMASKDNSAQRDSAFSLSSCGSLLAGT
SNNRAPTPSPPLCNQSDGHLALQLHHHATYSPSHCTSENPYMEPNPFSSNIWKNFNSQGP
AVLIQSLHPEIPSDFTHDSLPYTMWTEPQCKEVTDLEDAEQDLRESEDRGGGGGPLTWAQ
LEPTSLVSVGAVEPLGLCGDFELHRMEAEGSEALSLCRELGRQREAEERLHSVTAVAPLG
MGRGERDGVSDMEEGGSDGDEAEQQSSVKGESGSDSSEEEEEEEEEVEEEENDESNCKCD
ESGLEPGEVCAYAALSGKRTTKSWRHPLRKPTARAVPTAVKQQAASDDEPPEASLEEEEE
EEEEEEEEEEEEEEEEEEEEMEAWAKPLIYLWQNRKSCFTAEREFNANAATTPPHCAVCT
LFMPYHQAEDKVEDDAPIVARDTSKSSSPMEGPTRPCRGLRRTIPLVPEICFSFREQNCP
PTPTNPLLQEDGTSPLLYCQGCCLQVHASCYGVAADDVSEQWSCDRCTEGSFTAECCLCN
LRGGALKKTQSDKWAHVMCAVALPEARFSDEAKRGPIDTSRIPMQRYKLKCIYCRKRCSG
KRQAGACIQCSCGRCPTSFHVSCAHAAGVIMEPDDWPYVVSITCHRHQSRSSSAKQRACQ
APISLGQTVISKHKNLRYYSSKVAEITSQTFYEVMFDDGSFSNDTYPEDIVSRDCMNLGP
PEVGEAVQVKWPDGLFYGAKYLGSNVSYMYQVEFEDGSQVLAKREDVYALDEDLPNKVKR
RLSTASSMRFQDAFFTTQGERKRQRTPNSRFQKDYVALPGLRTTAKSTWEQRSHKGK
NT seq 5034 nt   +upstreamnt  +downstreamnt
atggcgggggcagaggtgtacacccctgcaaaccccacctgcaagattatgaccttcagg
cccaccatggaggagttcaaagacttcaaccagtacctggtttacatggagtctcagggt
gctcaccgcgcaggcctggctaaggtgattcctcctaaaggctggaagccccgtcgtacc
tatgacgacatagacgatctcatgatcgacgctcccatccagcagatgatggctggccaa
tcggggctcttcactcaatacaacatccagaagaagcctctcaatgtgcaggagttcagg
cgattagcaaacagtgacatgtactgtacaccacgctacctgaattatgaagatcttgaa
aggaaatattggaagaacctcacttttgtttcgcccatatatggcgctgatgtcagtggc
agcctctatgatgaggatgtggaggagtggaacatcggccacctgaactccatcctggat
gttatcgaagaggactccggggtgtccatccagggggtgaacactccgtatctatacttt
ggcatgtggaagaccaccttctcctggcacactgaggacatggacctgtacagcatcaac
tacctccactttggagagcccaagtcctggtacgccattccccctgagcacgggaagaga
ctggagcgtctggctacaggtttctttcccaacagcttcaaggggtgtgaggcttttctt
cgtcacaagatgactctaatctccccttccatacttaagaagtatggcattccctttgat
aagatcactcaggaagctggagagttcatggtcaccttcccttatggctaccatgctggc
ttcaatcatggcttcaactgtgcagagtccaccaactttgccactgtgcgctggatcgac
tatggcaaagtagccacacagtgcacatgtagcaaggacatggtgaagatatccatggag
ccctttgtgaaacgttttcaacctgaccgctacactaactggatggggggcaaagattct
gcaccccccgaccacatccttgctactcccagtacaacgccggagctgcagagctggttg
cagaggcggcgcaagaacaaacctacgaacaaaggctgcacgcactcacgaatgcgctcc
aagcgcctcagaaccaccgaggagccaattggcctgaatggcagctcagcgttgaccagc
agcaagaggaaaggcctgggtagtccgcctgggcctaaggtgcggaggattgtggcaggg
acgagctgcagggaagaggaggaggaggaggaggaggaggtggaggaaaagaaaaaggaa
aagggagcggagttgaagcacaaccagaactccgttctttctggtccttgcagacagatg
tgtgtggtcaaggtgaatcgtgtagagagtaatagtttgggttttttgaataaggagcca
tcacaaaactctcgctgcagcgccatcccctcccctgtttcagcagtgaagaaggaccta
aaggcagagacgggcagacacactgaccctcaacgcctctcagggtcaggggtcgtatgc
aggactcctgaaggactcagacaatggcctgaggctacccagacgcatccaggaattatt
gaggcacggtgttgctctcatgaacaacgagacctctcatctgctcaggactgctctacc
agggtctctcccctggaggccaacacactctgcccatcttcccacacaacgagcacttct
actgagactgagacaagcttgcgtccctctgactctgaagttcagacagctagtgcctca
tgcagagaagacactttaagcctaacaccaaacactgacattagcatgggctcgggtact
gaggattacgccgacagccctgctgaagcagagaaaatggacgcagttgttcatacaaaa
cgtatcacttcacactctactacagaagcactttatgatctcaaaactgagcccgtaggg
ggggatagttccacatcctgtggctccttctcccctgcagcacacaattgcagtttggaa
aaaaaccgcactgaggaaaatattttccctcccctcctacagaggaatgcagtggatatg
ccacgactcactccggagccagcagataaggttggaatctgcccgttgccccctgtgctt
atccaggagatgccctcgctcaccccggctgatgacgggctgaccatcgtcccgaaagcg
agcacgtgcagtcaccaggttgccccggtgcttcagcgggagacgccgaccaactcgccg
gcgtcgcatcgagccaagcaggaagagggagaaaccgactcaatgatgtcaaaggaacct
cttgccgcagaacccgccaacaagtggcatttagattctccgtataattgtgacgcggca
gcagtgtctggtttagaaggaaacgtggctcatttaaccaccagtgctctgcacaaaata
acatctggtggtgtccaggaaatgctaataatgccgggtatggctgcagaaaaggaccat
acaaagctggaaaatgttactcctggacggactgatgcttcctcaaaccagcaagttcag
agcactgcacctcaaacgggccagcaatacggcttagcagggatggcaagtaaagacaac
tcggctcaacgggacagtgcattcagtctgagcagttgtggctctcttttagctggcacc
tcaaacaatagagccccaaccccttcccctcctttatgcaatcagagtgacggtcaccta
gcattgcaactccaccaccacgccacatactccccttcgcattgtacgtccgagaacccg
tacatggagcccaatcctttctccagcaacatctggaaaaactttaattcccagggccct
gcagtgctcatccaaagtctgcacccagaaatcccctccgacttcactcacgactccctg
ccttacaccatgtggactgaaccccagtgcaaagaagtcacggacctggaggacgccgaa
caagacctccgtgagtcagaggaccggggtggaggaggcgggcctctcacctgggcccag
ctcgagcccacctcgctagtttcagttggagctgttgagcccctgggcctttgtggagat
tttgagctccacagaatggaggcggaggggtctgaagccctttccttgtgcagggagctg
gggaggcaaagggaggcagaggagaggctgcactcagttactgctgttgcaccactcggg
atgggaagaggagaacgggatggagtgtctgacatggaagaagggggatctgatggcgat
gaggcggagcagcaaagcagtgtcaaaggagagagcggtagcgactcatcggaggaggag
gaagaggaagaggaagaagtggaggaggaggaaaatgatgagagtaactgcaagtgtgac
gaatcaggcctggaacctggggaggtttgtgcctacgccgccctgtcagggaagaggacc
actaagagctggcgccacccactcaggaagccgactgcgagggctgtacccactgctgtc
aaacaacaggctgccagtgacgatgagcctcctgaagcaagcctggaagaggaggaggag
gaggaggaggaggaggaagaagaagaggaagaggaagaggaggaggaggaggaggaggaa
atggaggcgtgggcgaaacccctcatctacctgtggcagaacaggaagagctgcttcact
gcggagagggagttcaatgccaatgcagccactacaccgccacactgcgctgtgtgcaca
ctcttcatgccctatcatcaggccgaagacaaagttgaggacgatgcacctatcgtagcg
agggacacctccaaatcctcatctccaatggagggccccacgcgtccctgcagaggtctg
aggaggaccattcccctggtcccagagatctgtttctctttccgggagcagaactgcccc
ccaacgcccaccaaccctctgctgcaggaagatggcacctcccctctgctctactgccag
ggctgttgcctgcaagtccatgcaagttgctatggcgttgccgcagatgatgtcagcgaa
cagtggtcgtgtgatcgctgcacagaaggcagctttacggcagaatgctgtctctgtaac
ctcagaggtggagctctgaagaaaacccaaagcgacaaatgggcccacgtgatgtgtgca
gtagcactgccagaggcgaggttcagtgatgaagccaagaggggtcccattgacaccagt
aggatccccatgcagcgatataaactgaagtgcatctattgtcgtaagcgctgctcgggg
aagcggcaggcaggtgcttgtatccagtgctcatgtggccggtgtcccacctcctttcat
gtgagctgtgcccatgctgccggtgtaatcatggagccggatgattggccgtatgtcgtg
tcaatcacctgccatagacatcaatcacggagttcgtcagctaagcagcgggcgtgccaa
gcgccgatctcgctgggccagacagtaatctccaaacacaagaacctgcgctactacagc
tccaaggtcgccgagatcacctcccagacgttctacgaggtcatgttcgacgacggctcc
ttctccaacgatacctaccccgaggatatagtgagcagagattgtatgaacttgggtcct
ccagaagttggggaagctgttcaggtgaagtggcccgatgggctgttctacggtgccaaa
tacctgggatccaacgtatcctacatgtatcaggtggagtttgaggacgggtctcaggtg
ctggccaaaagggaagatgtctatgctttagatgaagacctgcctaacaaggtgaaacgt
agactttccaccgcctcgagcatgcgtttccaggacgccttcttcaccacgcagggcgag
aggaaacgccagagaacgcccaactcgcgtttccagaaagactacgtggccctgccgggc
ctccgtaccacggccaaaagcacatgggagcaacgcagccacaaagggaaatga

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