Cyclopterus lumpus (lumpfish): 117729257
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Entry
117729257 CDS
T09199
Symbol
tprb
Name
(RefSeq) translocated promoter region b, nuclear basket protein isoform X1
KO
K09291
nucleoprotein TPR
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117729257 (tprb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117729257 (tprb)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117729257 (tprb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
DUF7491
Motif
Other DBs
NCBI-GeneID:
117729257
NCBI-ProteinID:
XP_034386057
Ensembl:
ENSCLMG00005018057
LinkDB
All DBs
Position
4:12743838..12764992
Genome browser
AA seq
2361 aa
AA seq
DB search
MAALLLQELEGSELSKLSKTVQNKLERLFSDQQYEIDYLKAQQEQFRVDSEQQFFEKVKQ
LAQCQEDFLSQNQEHLKLKDEFKMQEEDHKRLREKNEEYESAQARLSSEKSLLAKTKEEL
EIEKRELVRTLERRSLEVEHLNDDFRQLNDKLVEVNTSKMALQMKLDELESAEVNIKYKE
KRMKQEKELLNSQTSWLNEELKAKSEELLSLSRQKGNEILELKCKLENKEDELNRLQDQV
ASFKTSNEHLQKRNEDTISKLKEAKEQQATMEEKFRNELNANIKLSNLYKGASADSEAKS
EELNRAVEELHKLLKDAGEANKALEETLQEMNGATDKSVAELKERIQSLEKELDNANELL
SSSKLRGPIGTTSMIAEEQMTTMSPTAATVSKIKPGMKLTELYTAYVESQEQLQLERLEN
KRVNKYLDDIVQEVEAKAPILKRQRDEHERMQKSVASLSAKLEQAVMEVHRLQKEADEAN
KLSSVLERDNQRCELQLGDLAQQVRVLLIELEEARGNYVIHEEDVSTADVSSTSEVISQH
LVTFRSVEELQKQNQRLLVALRELSDAQEKEEFEATGNKRGELEQFLDKAKLELETLKEQ
RSEQVKVTESIVRQRDLYRVLLAQATGVSFPQQGTQPEEFSLTSTPRRSPAAIPTTGTPT
SLVSMAKDSSEALAAKAALQQLQEVFSAYKKERMECNKAMTEQNEKLQEQLSDLHSQNSK
ISTQLEFASKRYEMLQDNVERYRKEIASLREKGQKMAAATQRHEQTIHTLNEDLKAAKEK
LTMAEGHAESLRKERDMLKLVESQLNQERESILSHQQSQNLLMTNLQAIQATLERSEADT
HQRLNGQIEKQEREISQLQKRLEHEVEQRHILSRNQEIQLMEAKRQLELQVPIHQRTKEL
LNAAELELNTLRLQLGSSELRHSLGSPTTPIIRGLPGSDHDREDLQGRLRLAESRAEELA
ESLRVATSSLELYRAMAQSLEESLDKEKQVTEQARSSIEARMKEAEKQHRQLEEKLLEAE
KDKHNTEEQKRRALASLEEQMNSLRRSLSSAQADHQAVLQQVAVAEAQQQQALQDSHEQA
KLALEAQDKYEREMILHAADVKALQAAKAQAVQAVELRHQLDERAQRVSAELLEARVSWE
EQEKILKEEMSKMEIRYEELQRQNTLLHEQIQTMSSKMADKLQRAANESPLNISLTEEGK
SQDQVLEILRFVRREKEISESRFEVAQGESLRYRLRVEHLERELKEVQDSLSAAKERMQV
TAKTLAQHDELMKKTETMSILMETNKMLREERDKMEQELHQTQAKVQKMESDIMPLQQAN
SELSEKSGMLQAEKKILEEEIKRWKARTQNLVSQQKDSDPEEYKRLHSEKEANLKRILQF
TEESTRLKAEVARTNNLTTSLQSQMQNLRDNMSKITDERNKLKKEMDTKNQELQEKVRTI
TQVKKIGRRYKTQYDELKLEHDKLVAEAAAGPSQEEEARQASVQELQSLRDSLNQAEAKT
RELEGQLENSNKVVTERETEGRNAQEQSSRLQTELTRLRQELHDKAAHEDTLRQQMTDKE
DKTRKAIVYAKQKINQLTSTKDQLHKDNEELKQQREELEVRVSALKSQYEGRLSRQEREL
RDLRGQQERQEQRDEPPEAGPCKTQEQQRSTEQRQISLKTTPAADRGSASTSEPPTANIK
PTPVATSSKQPVNPGNKPTPRASIRPMITPATVPTPTPTATVMPTTQVETQETMQSTEGP
PVEHVTVYGSASGSVRSASPNVQTTLTSPMLTVQQTQTQATAFVQPTQQQSMTHTEPANQ
EPLTMVIEATPSSQVEWPSTSSSVFGTVSATPGISSMSKRPREEEESATVVTDTESTQED
TSRLPNPKKLRIIQRVGPEEEVLVEDSAEAEAVVLTDSQDGAEASQTEDFPVLEEEDEGA
SSQCIMIEQEITLTQSDSPHQLRQEVIVIVTDTESDDDQEEDEEEEQDYEEEEEEEEDEE
EEEDQEEDDGEMGEEGEDSNEGSGDGNEAYEEDEAEGADVTDPGTETEESLGASDSTQRP
ADSQTPSFDGTMEAYSTEQPITSSGTRLPQSPRRPTHLLPSRLNIAPTSELGPPAQVQRI
PVRRQSVGRVPTLTPGVPVSSQHFFDDDDRMVPSTPTLVLPQRSDGFDQTIHSPQVAGVP
RFRFGLSDDVPQTSSSSHSDLGQLASQGGLGMYESPLFLATHEEESGGRTVPTTPSQVSA
PVTIFSEVAQSDTTSEHASQSVPMVSTSTPGLVPGAAGTGEDRDDVFLEPDTDRPSAEVL
LDPVVLQGDLEEPGQQSDKACLPSTSQEPSSSSADTSSAPPKSSRPGSSRQLQRWPEHRG
GRMKRGGGFPSRGVHGRRFAR
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atggcggcactgctgctgcaggagttggaaggttccgagctatcaaagctatcaaaaacc
gttcaaaacaaactcgagaggcttttttcggatcagcagtatgaaatcgattatttaaaa
gcgcaacaggaacaatttcgcgttgacagcgaacaacaattctttgaaaaggtgaaacaa
cttgctcagtgtcaagaagattttttgtcccagaatcaagaacatcttaaactcaaagat
gagtttaaaatgcaagaggaggaccataaacgtttgcgtgagaagaacgaagaatatgaa
tccgcacaagcaaggctgtcatctgagaagagtttgctggcaaagaccaaagaagaactg
gagatagaaaagcgagaacttgtgcgaacactggagaggagatccttggaagtggagcat
ttaaatgatgacttcaggcaactcaatgacaagttggtggaggttaacacctctaagatg
gccctacagatgaagttagatgaacttgaatcggctgaagtcaacattaaatacaaggag
aagcgtatgaaacaagagaaggagctgctgaatagccaaacatcttggctgaatgaggaa
ttgaaagctaagagcgaagaactgctgtccctttcccgacagaagggaaacgagatacta
gaactgaaatgcaagctggagaacaaggaagatgagttgaacagactccaagaccaagtg
gccagtttcaagacttcaaatgagcaccttcagaaacggaatgaggacacgatcagcaaa
ttgaaagaagccaaggaacaacaagccaccatggaggaaaagttcagaaacgagctgaat
gctaacattaagctttccaatctatacaagggagcatcagcggattctgaggcaaaaagt
gaagagctgaatcgggcagtggaggagctgcataagctgctgaaagatgctggagaagcc
aacaaggcccttgaagagacattgcaggagatgaatggtgccacagacaagagtgtggct
gagctaaaggagaggatccagagtctcgagaaagagttggacaatgccaatgagctgcta
tcaagttctaaacttagaggccctattggtacaacatctatgatcgcagaagagcaaatg
acaacaatgtctccaacggcagcaactgtatccaagataaagcccggcatgaagctgaca
gagttgtacactgcatatgtggagagccaggagcagctgcagttggagcgattggagaat
aagcgagtcaacaagtacctggatgacattgtgcaggaagtagaggcaaaagccccaatc
ctcaaacggcagagggacgaacatgagcgcatgcagaagtcagtggccagtctttctgcc
aagctggagcaggctgttatggaggtacatcgtctgcagaaggaagctgatgaagctaac
aagctttcctctgtcctggaaagggacaaccagaggtgtgaactgcagctgggagacctg
gctcaacaggtgcgtgtgctgctgatcgagctggaagaggctcgtggaaactatgtgatt
catgaggaggatgtgagcacagctgacgtcagcagcacatcagaggtgatcagccaacac
ttggtgacctttcgcagtgtagaggagctacagaagcagaaccagcgtcttctggtggcc
ctcagggagctcagtgatgcccaggagaaagaggagtttgaggccactggcaataaacgt
ggtgaactggagcagtttttggacaaagccaagcttgagctggagaccctgaaggagcaa
cgcagcgagcaggtcaaggtgactgagtccatcgtgaggcagagggacttgtaccgtgtg
ctgctggctcaggcaaccggagtcagcttccctcagcagggtacacaacccgaggagttc
tccctaacctccaccccccgacgctcacctgcagccattcccaccacaggaacgcccact
tcactcgtctccatggcaaaagactcttctgaagccttggcggccaaggcagctttgcaa
cagttgcaagaggtgttttctgcctataagaaggagcgtatggagtgtaacaaggccatg
acggagcagaacgagaagctccaggagcaactctctgacctccactcgcagaattctaag
atatcgacccagctagagtttgcctcgaagaggtacgagatgcttcaggacaatgttgag
cgctacaggaaggagattgcttccctcagagagaaagggcagaagatggccgcagccaca
cagaggcatgagcagaccatccacactttgaatgaggatctgaaagctgccaaagagaaa
cttaccatggctgagggccatgctgagagccttcgtaaggagagagacatgctgaagctt
gtggagtctcaactgaatcaggagagagaatcgatcctgagccatcaacagagccagaac
ctgttgatgaccaacctccaggctattcaggccactcttgagcgttcagaggctgatacg
catcaacgtctaaatgggcagatagagaagcaggaacgagagatctcccagctgcagaag
aggctggagcacgaggtggaacagcgccacattctcagcagaaaccaggaaattcagttg
atggaggcaaagaggcagctggagctacaggtaccaatacaccagaggaccaaagagctg
ctgaatgctgccgagctggagctcaacaccctcaggctgcagttaggcagcagcgaacta
cgtcacagcctgggctcccccaccacacccattatcagaggcctgccggggtcggatcac
gacagagaggacttacagggccgtctgcggctggctgaatcccgggccgaggagctggca
gagagcctcagggtagccacctccagcttggagctgtacagagccatggcccagagcctg
gaggagtccctggacaaagagaaacaggtaacagagcaagctcgctcatccatcgaagct
cgtatgaaggaggctgagaagcagcaccgacagcttgaggaaaagcttctggaagcagag
aaagataaacacaacacagaggagcagaagaggagagccctggcctcattagaggaacag
atgaacagtctgagaaggagtctcagcagcgctcaggctgatcaccaggcagtgctacag
caagtggcagtcgctgaagcccaacagcagcaagctctacaagacagtcatgagcaggct
aagctggcacttgaagcgcaagacaagtatgagcgggagatgattctgcatgcagccgat
gtaaaggccctgcaagctgctaaggctcaggccgtgcaggccgtcgagctcagacaccag
ctggatgagagagcccagagagtcagcgcagagctgctggaggccagggtctcctgggag
gagcaggaaaagatccttaaggaggagatgtcaaagatggagatccgctatgaggagttg
cagaggcagaacacccttctgcatgagcagatccaaacaatgagcagcaagatggctgac
aagttgcagcgggctgccaatgagagtcctttgaacatctcccttactgaggagggcaaa
tctcaagatcaggtccttgagattctcaggtttgtgcgtcgagagaaagagatttcagag
tctcgttttgaggttgcccaaggggagagtttgcgttaccgtctgagggtggagcatctg
gaacgagagttgaaggaggtgcaagacagtttgagtgctgcaaaggagagaatgcaggtg
acagcgaagaccctggctcagcatgatgaactgatgaagaagactgaaacaatgagcatc
ctgatggagaccaacaagatgctgcgagaggagagggacaagatggagcaagaactgcac
caaacccaagctaaggtacaaaagatggagtcggacatcatgccactgcagcaggccaac
tctgagctgagtgagaagagcggcatgctgcaggcggagaagaagatacttgaagaggag
atcaagcgatggaaagctcgaacccagaatttggtgagccagcaaaaagattcagaccct
gaagagtacaagcgtctgcactctgagaaggaggccaatctcaaacgcattctgcagttc
actgaggagagcaccagacttaaagcagaggtggccaggactaataatctaacaacatct
ctgcaaagtcagatgcagaacttgcgtgacaatatgagtaagataactgatgagaggaat
aagctgaagaaggaaatggacaccaagaaccaggaactccaagagaaagtacgaactatc
actcaggtcaagaagattggacgccgctacaagactcagtatgatgaactcaagttggaa
catgacaagttggtagccgaggctgcagcaggcccatcccaagaagaggaggctcgtcaa
gcctcagttcaggagctgcagagcctccgagattctctgaaccaggcagaagccaagacc
agagagctggaaggacagctagagaacagcaacaaggtggttacagagcgtgagactgaa
gggcgtaatgcccaggaacagtcatccaggctgcagacagagctgaccaggctaaggcag
gagctgcatgataaggctgctcatgaggacacactgagacagcagatgactgacaaagag
gacaaaaccaggaaggccatcgtctatgccaagcagaagatcaaccagctcacaagcacc
aaagaccagctgcataaagacaacgaggagctaaagcaacagcgcgaggagctggaggtg
cgagtgagcgctctcaagtctcaatacgagggccgtctcagtcgacaggagagagaactg
agagacctgcgaggtcaacaggagaggcaagagcagagggatgagccacctgaggcaggt
ccctgtaagacccaagagcagcagaggagtacagaacagaggcagatcagtctgaagacg
accccagctgcagacaggggaagtgccagcacatctgagcctccaactgccaacattaag
ccaacacctgtggctacatcaagcaagcagcctgtcaatccggggaacaaacccaccccg
agagcaagcatcaggcccatgattaccccagcgactgtacccaccccaactcccacagct
actgtgatgcccaccacacaggtggagacccaagaaaccatgcagtctactgaaggccca
ccagtggagcatgtgactgtgtacggcagtgccagcggctcggtgcgctctgctagcccc
aacgtccagaccactttaactagccccatgctgaccgtgcagcagacccagacgcaggcc
acggcatttgtccaaccgactcaacaacaaagtatgacccatacagagccagccaatcag
gagccactaaccatggtcattgaggcaacacctagctcgcaggtggaatggccttcaact
tcctcctcggtctttggaactgtttcagcaacgccaggaatctcctccatgtcaaagagg
cctcgtgaggaggaggagagtgccaccgtggtcactgacacagagtccacccaggaggat
acctccaggcttcctaaccctaaaaagctgcgtatcattcagagagtgggtccagaggag
gaggtgctggtggaagacagtgctgaggctgaggcggtggtgctaacagacagtcaagat
ggtgcagaagcaagccagacggaggactttccagttctggaggaggaagatgagggtgca
tcctcccagtgcatcatgatagagcaagagattaccctgacccaaagtgactctcctcac
cagcttcggcaggaagtcatcgtcatagtaacggacacagagagtgatgatgaccaggaa
gaggatgaagaagaagagcaggactatgaagaggaagaggaagaagaggaggatgaggag
gaagaagaggatcaggaggaagatgacggagagatgggggaggaaggagaagacagtaac
gaggggagcggagacggcaacgaggcttacgaagaagacgaagcagagggagctgatgta
acagacccgggcacagagacagaagagagtttgggggcgtctgactccacccagaggcca
gcagattcccagacacccagctttgacggtacgatggaggcatactctacagaacaaccc
atcacaagctctggtacacggttgccccagtcgccacgaagaccaacacatctgctgccc
tctcgcctgaacattgccccgacatcagaactgggaccacctgctcaggttcagcgtatc
cctgttcgtcgccagtcagttggcagagtcccaacgctcactcccggggtgccagtcagt
tcccagcacttctttgatgatgatgacaggatggttcccagcactcccactctggtgttg
ccacagcgctccgatggttttgaccagacaatccattctccccaagtagccggtgtgcct
cgcttcaggtttggtctctcggacgacgtgccacagaccagctcctcctcacactcggac
ctgggacagctcgcctcacaaggaggtcttgggatgtatgagagccccttgttcctagcg
actcatgaagaggagtctggtggacgcaccgttcccaccacaccgtcacaggtttcagca
ccagtaactatcttctcagaggtggctcagtctgacaccaccagtgagcacgcctcccag
tcggttcccatggtgagcacttccacaccaggcctggtaccaggagcagccggcacaggg
gaggacagagacgacgtcttcctggagccagacactgatagacccagtgcagaagtattg
ttagatccagtggtcttgcagggagatttagaggagccaggccagcaatctgacaaggcc
tgcctcccctccaccagccaggagccctcttccagctctgcagatacaagcagtgcacca
cctaaatcatctagacctggatccagcagacagctgcagcgctggccagaacaccgcggt
ggccgcatgaagaggggaggtggatttccttctcggggtgtgcatgggagacgattcgcg
agatga
DBGET
integrated database retrieval system
