Cyclopterus lumpus (lumpfish): 117729321
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Entry
117729321 CDS
T09199
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04512
ECM-receptor interaction
clum04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117729321 (frem1b)
04518 Integrin signaling
117729321 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
clum04091
]
117729321 (frem1b)
Lectins [BR:
clum04091
]
C-Type lectins
Lecticans
117729321 (frem1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
117729321
NCBI-ProteinID:
XP_034386185
LinkDB
All DBs
Position
4
Genome browser
AA seq
2141 aa
AA seq
DB search
MAAALPGRLLLLLAAATCCQGLVAVNSGVEVARGRSVFVTERELKISPGPTADCKVEVVM
NEPVTQRVGRLTPQVFDCSFLEDEVQYVHDGSPLLDQDAVMLRVYRFTASDTLVETVVLP
VRVVDSGSGVVELGSAPLVVPLFYGLSNAIDSSVLNIRTTADLVCIVRLMTTGTGVPALG
QLVREEDSTLRKGRETAALCPGNKPCRHDTKEVLFLKTSCQDFLSSGLKYQHLSPPSPEI
DYIPIRVELREQGSRALLEAQSVWLPVLIHGAMQNQPPQASFMASFILEVDQFILTPLTT
ASLDAEDHETPQEGLVFNMTAPPAEGYVTHLDDHTKPLTSFTWLDLHEMKVAYQPPNSSQ
SHRRNYEVEFQAIDRSYMTSPPIVVHISIRATETNAPRVSWNMGLDLLEGQSRPITWEEL
QIVDNDNIDAVYLVAVDGPLHGRLSVRGGKGFMFRVRDLREGAVVYHHSDSDTTSDHVVF
RISDGRHSIRHRFPINVLPKDDSPPFLVNNVAVEVREGGAVRLEEFTLLASDLDSSDDYI
LYRVTSGPMAGQLVRKTSTHETGDAVDRFLQRDLIQGQIYYQHSGEEQFEDSFDFTLSDS
HQPPNLSQTYTVVVHVFPVKDQLPAEVSGSVRSLTVKETQVVHVTQAHLHFVDREHPDTH
LTYVITQPCFSPLHPGLMDAGRLFFTDSANSMKRDHMVPELKSFTQHAVHHMKVAFMPPV
EDIGPEPLFVQFVFSVSDHHGGTVPGLLFNITVTPVDDQAPEAFTNLLRVEEGGGAFVTE
EHLLVQDRDSREGALRAEVRRTARHGRLELQGRALQGGEGFTLQDLRGLRLRYIHDDSET
TEDEVHLEVTDGLNSVDVVLSIQVLPMNDEPPQLGGGLQGELSCMEAGQVQITVDYLSAT
DRDSDDSRLTYMLARSPGRGELQRAGLTVDKFSQQDLLQGHVYYVHAGGEIGPEPVFDTV
TLIISDGEAGGTDGCCHGDAPPPPVPLHGTLPVYDLNITVLPVNNKVPTITLGESMLVVD
EGTTACLCGGVLGASDPDSPADRLTFHLETPPQHGFLENTQPTPGFEKSNAGVRVESFSL
VHLTSGFINYVQSESEGAEPTVDQLSISVSDGLHRSAFVPFYIIINPTNDETPSLLLANF
TVKEGGMKELTSSLLNGFDLDAPPDVLTFTLVQPPAHGSLINGIYGTEMSRYEEVMGAEL
LQRSSAPITSFTLQELLQGMKIVYMHDDTETLKDAVALRLTDGVHTVQGTARVTVLPVND
EKPRLLKNVGLEVDSGEHRVISSVALEAQDLDTPPNQVHYFLNAAPRFGKLRLKTQSGWT
ELSAGRNFTQDDVEMNRLWYAHTRPATAAGFKGHDSFRFTLSDLDNESPAHSFFISVHAV
RKGDLVLVSKAVRLMEGQRVVLNTDVLLASDSAGRPEELVYTLSVPPRHGLVHAVRQPGV
PLTSFTQLDVAGQRVCYAHDNSHRADTDAFSFVVTNGDASLSGTLHFTVEHGDRIPPTLH
RNTGLRLQDGATEPVTSDQLRLTDPDTTAADLSYVITRPPRRGTLLLRGVPLTPPLAFAQ
TDVDRLNLAYRHDPGSPAGVDRFHFLPTDGTNRGFLEFGQLRDEPAVFNIQVDRVDRLPP
SLTTRRSPSAVVDLGGGRYGILITSKHLQASDPDSPAEELEFSITRPPLSGYLENTLTGA
YIKGRFTQRDVDQRAVAFVLPADVEVTSDSFLFRLTDPAGNAMLPGVLELSWSRVELSAT
CYRTCETSGTLQIQIQRSGKSADPAYVAIQVEAGSAKPGRDFTHSTAGLIQFDPGVSVKT
WNIYLIDDGLEENQETFFVTLKNPQNAVLGQRTSASVEIIDPRGGRCDPVHLKVEEDEAR
LPPLPPGLPDPPRPKEKDAVTDIEAELLWEDRPHPPRGDVPNRRPYLDGEGEPQDQAAHG
GYSQVHYHGRQLPGASTGSTGSTGHTGLKVHQSGERRSEQKVWTFHSLTPLRVEELKPGD
AGWSRSPRGPLPQDFGGPPQMDHPEPRSQPELRQRKTGKATSSSCPDGWTHYRRRCYSVG
LSVASWASAERSCSLLFNSSLTGVRSRKDLVWLWRFTGRKPFWIGLSGGPARWMGADGRT
RSFSKPSSDCVLVESPRSWISTGCSPETQHAFICSSPAHTH
NT seq
6426 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgctctgccagggcgcctgctgcttctgctggcggcggcgacgtgctgccag
ggtctggttgcggtgaactcgggtgtggaggtcgctcggggtcgctcggtgttcgtcacg
gagagggagctgaagatcagcccgggcccgaccgcagactgtaaggtggaggtggtgatg
aacgaacccgtcactcagagggtggggaggctgaccccgcaggtgtttgactgcagcttc
ctggaggatgaggtgcaatacgtccacgacggcagtcctctgctggaccaggacgcagtg
atgctcagggtctacaggttcacggcctcggacacgctggtggagacggtggttctgccg
gtgcgggtggtggactcggggtccggcgtggtggagctgggcagcgctccgctcgtggtc
cctctgttctatggtttatccaacgccatcgacagctccgtcctgaacatccggaccacc
gcagacctggtctgcatcgtcaggctgatgaccaccggcaccggcgtcccggctctgggt
cagctggtgagggaggaggactccacactgaggaagggcagagagacggcggcgctctgt
cccgggaacaaaccctgtcgccatgacaccaaggaggttctcttcctcaaaaccagctgc
caggacttcctgagctcgggtctgaagtaccagcacctcagccctccgtcgccggagatc
gactacatccccatcagggtggagctgagggagcagggcagcagggctctgctggaggca
cagtcggtgtggttgccggttctgatccacggcgcgatgcagaaccagccgccccaagcc
tcctttatggcctccttcatcctggaggtggaccagttcatcctcaccccgcttaccaca
gcttccctggacgccgaggaccacgagacaccgcaggaggggctggtcttcaacatgacc
gccccgcccgccgagggctacgtcacccacctggacgaccacacgaagcccctcacgtcc
ttcacgtggctggacctccacgagatgaaggtggcctaccagccgcccaacagcagccaa
tcgcaccgcaggaactacgaggtggaattccaggctatagaccgttcctacatgaccagc
ccacccatcgtggtccacatctccatccgggcgacagaaacaaatgcccccagagtctcc
tggaacatgggtttggacctgctggagggtcagtctcggccaatcacgtgggaggagctg
cagatagtggacaacgacaacatcgatgcggtctatctggtggctgtggacgggcctctc
catggacgccttagtgtcagaggtgggaaggggttcatgttccgcgtgcgggacctgcgg
gagggcgccgtggtctaccaccactccgacagcgacaccacaagcgaccacgtcgtcttc
cgcatcagcgacggccgccacagcatccgccacaggttccccatcaacgtgctgcccaag
gacgactcgccgccgttcctcgtcaacaacgtggcggtggaggtgcgggagggcggcgcc
gtgcggcttgaggagttcacgctgctggcctccgacctggactccagcgacgactacatc
ctctaccgggtgacatcgggccccatggcggggcagctggtgcgcaagacctccacccac
gagacgggagatgccgtggaccgtttcctacagagagatctgatccagggtcagatctac
taccagcactcgggagaggagcagtttgaggactccttcgacttcacgctgtctgacagc
caccagccgcctaacctctcccagacatatacggtggtggtccacgttttcccggtgaag
gaccagctgccggcggaggtctccggcagtgttcgttctctgacggtgaaggagacgcag
gtggttcacgttacccaggctcacctccacttcgtcgaccgagagcatccagacacacac
ctgacctacgtcatcacgcagccctgcttcagcccactgcatcctgggctgatggatgca
ggacgtctgttcttcacagacagtgccaacagcatgaagagagaccacatggtgccagag
ttaaagtccttcacacagcatgcagtgcaccacatgaaggtggccttcatgcctccggtg
gaagacattggtccggagccgctgttcgtccagttcgtcttctccgtcagcgaccaccac
ggcggcaccgtccccggccttctcttcaacatcaccgtcacccccgtggacgaccaggcg
ccagaggccttcaccaacctgctgcgggtggaggagggaggaggggcctttgtgaccgag
gagcacctcctggttcaggaccgggacagcagggagggggctctgagggcggaggtccgg
aggacggctcgacacggccggctggagctgcagggccgagcgctgcagggaggagaggga
ttcactctccaggacctaagaggactccgcctcaggtatatccacgacgactctgagacc
accgaggatgaagtccatctggaggtgacggacggtctgaactcagtagacgtcgttctg
tcgatacaggtcctgccgatgaacgatgaacctccacagctgggtggagggctgcagggc
gagctgagctgcatggaggcggggcaggtccagataacggtggactacctgtcggctaca
gaccgggacagcgacgactccagactgacctacatgctggcccggagtcctggccgaggg
gagctgcagagagccggactgaccgtggacaagttctcccagcaggacctgctgcaggga
cacgtctactatgtccacgcaggaggagagatcggacccgagccggtatttgacactgtc
acactcatcatctctgacggcgaggctggaggaacggacggatgttgccacggagacgcc
ccgccccctcccgtgcctctccacggcacgcttcctgtgtacgacctgaacatcaccgtt
ctccctgtcaacaacaaagtacccaccatcactctgggtgagtccatgttggtggtggac
gagggcaccaccgcctgtctgtgtgggggggtcctcggggcctcagaccctgacagcccc
gccgaccggctgacctttcacctggagactccacctcagcatggcttcctggagaacacg
caaccgactcccggcttcgagaagagcaacgcgggagtccgagtcgaatccttcagtctt
gtccacctgacctctggtttcatcaactacgtccagtcggagagcgaaggggcggagccg
accgtcgaccaactgtccatcagcgtgagcgacgggctgcaccgctccgcctttgtcccc
ttctacatcatcatcaatccaaccaatgacgagacgccttcgctgctgctcgccaacttc
accgtgaaggagggcgggatgaaggagctgacttcctccttactaaacggcttcgacctg
gacgccccgccggacgtcctgaccttcacgctggtgcagccgccggctcacggcagcctg
atcaacggcatctacggcacggagatgagccgctatgaggaggtgatgggggcggagctc
ctccaaaggagctccgcccccatcacctccttcaccctgcaggagctcctccaaggcatg
aagatcgtgtacatgcacgatgacacggaaaccctgaaggacgccgtggctctgcggctg
acagatggcgtccacacagtccagggcacggctcgggtcaccgtgctgccggtcaacgac
gagaagccacggctgctcaagaacgtggggttggaggtggactccggggagcacagggtt
atttccagcgtggcccttgaggctcaggacctggacaccccccccaaccaggtgcactac
ttcctcaacgccgcaccgcgcttcggcaagctgcggctcaagacgcagtcgggctggacc
gagctgtcggccggccggaacttcactcaggacgacgtggagatgaaccggctgtggtac
gctcacacgcgccccgccaccgccgccgggttcaaaggtcatgacagcttccgcttcacc
ctcagcgacctggacaacgagagccccgcgcacagcttcttcatctccgtccacgcagtg
cggaaaggtgacttggtgctggtgagcaaggcagtgcgtctgatggaggggcagcgcgtc
gtcctgaacaccgacgtcctgctggcgtcggactcggccggtcgtccggaggagctggtg
tacacgttgtcggtcccgccgcggcacggcctcgtccacgccgtccggcagccgggcgtc
ccgctgaccagcttcacccagctggacgtggccggccagcgcgtgtgctacgcccacgac
aacagccaccgcgcggacacggacgccttcagtttcgtcgtcaccaacggcgacgcgtcc
ctcagcggcaccctccacttcaccgtggagcacggcgaccgcatcccgccgaccctccac
cgcaacacggggctccggctgcaggacggcgccacggaacccgtcacctccgaccagctg
cggctcaccgaccccgacaccaccgccgccgacctgagctacgtcatcacgcggccgccg
cgccgcggcacgctgctgctgaggggcgtcccgctgacgccgccgctggcgttcgcccag
acggacgtggacaggctgaacctggcttaccggcacgacccgggcagcccggctggtgtc
gacaggttccacttcctgccgacggacgggaccaacagagggttcctcgagttcggccag
ctgagagacgagccggctgtcttcaacatacaggtggaccgcgtggacaggttacctccc
agtctgaccaccaggcggagccccagcgcagtggtggatctgggcggcgggcgttacggc
atcctcatcacttccaaacacctgcaggcctccgaccccgacagccccgcggaggagctg
gagttctccatcaccaggccgccgctctccggctacctggagaacaccctcacaggagct
tacatcaaaggtcgcttcacccagcgggacgtggaccagcgcgccgtggcgtttgtcctc
ccggccgacgtggaggtgacgtccgacagcttcctgttccgcctcaccgacccggcagga
aacgccatgttgcccggagtactggagctgtcctggtcccgggtggagctgtcggcgacc
tgctacagaacctgcgagacctctgggacccttcagatccagatccaacgcagcgggaag
agcgccgacccggcgtacgtcgccatccaggtggaggcgggatcggccaaacccggcagg
gacttcactcacagcacggccggcctcatccagttcgacccaggagtcagtgtgaaaacc
tggaacatttacctgatagatgacggtctcgaggaaaaccaggagaccttctttgttacc
ctgaaaaacccccaaaacgccgtcctgggacagaggacctccgctagtgtggaaatcatc
gaccccagaggaggccggtgcgatccagtccacctgaaggtggaagaggatgaggcgcgg
ctccctcctcttcctccaggcctcccggaccctcccagaccgaaggagaaggacgccgtc
accgacatcgaggccgagctgctgtgggaggaccggcctcaccctccccggggcgatgtt
ccaaaccgccgaccctacctggacggagagggggaaccgcaggaccaggcggcccatggc
ggctacagccaggtccactaccacggccggcagctacctggggcgagcactgggagcact
gggagcactggacacacgggactgaaggtccatcagtccggagagagaaggtctgagcag
aaggtctggacgttccacagtctgactcctctccgggtggaggagctgaagccgggtgat
gccgggtggagccggtcgcctcgcggtcccctcccgcaggactttggggggcctcctcag
atggaccacccggaacccagaagccaaccggagctgcgccagcgcaagacggggaaggcg
accagcagctcctgcccggacggctggactcactacaggagacgctgctatagcgtcggc
ttgtccgtggccagctgggccagcgccgagaggagctgctctctgctgtttaacagcagc
ctgaccggcgtgcggtccaggaaagacctggtctggctgtggaggttcacagggaggaag
cccttttggatcggtctgtctgggggtccggctcgctggatgggggccgacggccggacg
cgttccttctccaaaccgagctcggactgcgtgctggttgagagccccagaagctggatc
tccacaggctgctcccccgaaactcaacacgcattcatctgctcatcgccggctcacact
cactga
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