Cyclopterus lumpus (lumpfish): 117729329
Help
Entry
117729329 CDS
T09199
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117729329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117729329
03009 Ribosome biogenesis [BR:
clum03009
]
117729329
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117729329
Spliceosome [BR:
clum03041
]
Complex A
U1 snRNP components
U1 related factors
117729329
Complex B
117729329
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
Pre-60S particles
Helicases
117729329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
117729329
NCBI-ProteinID:
XP_034386198
Ensembl:
ENSCLMG00005023023
LinkDB
All DBs
Position
1:complement(7618091..7625648)
Genome browser
AA seq
636 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGGGNRSGPPPGKFGNPGERLRKKHWNLDELPK
FQKNFYQEHADSIRRPPQEVEQYRRSKEVTVKGRDCPKPIIKFHEASFPTYVMEVIAKQN
WTDPTSIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVL
APTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE
CNKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDF
LKDHVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRR
CDEITRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFV
INYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLIQ
MSEDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFGNGPKSAFGGNKAQ
NGGSFGGNSGNSSGSYGNNNYSNNNGQGNFGAQANQVGAFSNQSFQGAPQFGAMQRAGQN
GMNPFPFNSQPPPPQAQQPPPPPPMVPYPMPPPFPQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcagaccgagatcgtggcagagatagagggtatggtggaggacctcct
cgttttggtggtggtggtggtggtggtggaggtaataggagcggacctcctccaggaaag
ttcggcaaccctggtgagaggctgcgaaagaagcactggaaccttgacgagcttccaaag
tttcaaaagaacttctaccaggaacatgcagattccattcgcagaccacctcaagaggtt
gaacagtaccgaagaagcaaagaagttaccgtcaaaggcagagattgtcccaaaccaatt
ataaaattccatgaagcttcatttccaacctatgtcatggaagttattgccaaacagaac
tggactgatccaacttcaattcagtctcaggggtggccagttgccctgagtggtaaagac
atggttggcattgctcaaactggttctgggaaaacacttgcgtaccttctgcctgcaatt
gtgcacatccaacatcagccattcttggagcacggagatggacctatttgcttggtgctg
gcgccaacccgtgagctggctcagcaggtgcaacaagtggctgctgaatacggcagggct
tcccgtctcaagagcacctgcatctacggcggtgcccccaaaggacctcaaatcagggac
cttgagagaggtgttgagatttgcattgctaccccgggtcgtctcattgacttcctcgag
tgcaataagactaatttgcgacgttgcacctatctggtgctggatgaagcagaccgcatg
ctggacatgggatttgaaccccagatccgcaagatagtggaacaaattcggccagaccgt
cagaccctgatgtggagcgccacctggcctaaggaagttcgccagctggctgaggacttc
ctgaaggaccacgtccagatcaacattggcgcgctgcagctcagtgccaaccacaacatc
ctgcagatagttgacgtttgcaatgacatggagaaggaggacaaactgatccgtttgctg
gaggagataatgagtgaaaaggagaacaagaccattatttttgtggagaccaaaaggcgt
tgtgatgagatcactaggagaatgagacgagatgggtggccagcaatgggaattcatgga
gacaagagccagcaggagagggactgggtccttaatgagttcagatatggcaaagctcca
atcctgatcgctacagatgtggcctcccgtggcttggatgtggaggatgtgaaatttgtc
atcaattatgactaccctaactcctccgaggattatatccatcgcattggacgcacagcc
cgaagtcaaaaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagcc
agtgacctgatcgctgtgctcagagaggccaatcaggccattaaccccaagctgatccag
atgtcagaggacagaggaggtcgtggtagggggggaagaggtggctacaaggatgatcgt
cgggataggtattctgggggtgggaggagcaactttggtggtagtagctacagggacagg
gacagtgatagagggtttggcaatgggccgaagagtgcctttggtggcaataaggcacaa
aatggtggcagctttggaggtaatagtggtaactctagtggtagctatggcaacaacaat
tatagcaacaacaatggacagggtaattttggtgctcaggccaatcaggtgggtgcattt
agtaaccaaagcttccagggggcccctcagtttggggccatgcagagggccggtcagaat
ggcatgaacccattcccattcaactctcagccaccaccaccacaggcccaacagccgcca
cctccaccaccaatggtgccctaccccatgccaccaccctttccacagtag
DBGET
integrated database retrieval system
