Cyclopterus lumpus (lumpfish): 117729334
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Entry
117729334 CDS
T09199
Symbol
ddx10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
clum03009
]
117729334 (ddx10)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117729334 (ddx10)
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
90S particles
Helicases
117729334 (ddx10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
PAS_11
Motif
Other DBs
NCBI-GeneID:
117729334
NCBI-ProteinID:
XP_034386202
Ensembl:
ENSCLMG00005020298
LinkDB
All DBs
Position
4:complement(3908841..3912442)
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AA seq
786 aa
AA seq
DB search
MENKGGTSTGKKPKPTKMDDSTDPVKNFEKWKKKYNKTKAEVKRERAQQKKPEWQVEREY
IDKLVSRYGDINAKEAIRFSDFPISKKTLQGLQGGQYRQPTEIQRQTIGFALLGKDVLGA
AKTGSGKTLAFLIPVLECLYRHQWSSMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSA
GLIIGGKDLAVESERIHRTNIVVCTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGF
ADTINAIVENLPKSRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQSY
VVCDLHQKVNMLYSFIKSHLRKKVIVFFACCKEVQYLYRVLCRLRPGMPILALHGKQQQM
KRVEVYNDFLRKQNAVLFATDIAARGLDFPTVNWVLQFDCPEDGDTYIHRVGRTARYKEG
GEALLLLLPSEEKGMVGQLQEKKVPINKIQVNPDKLQNIQQKLEAFLAQEKEQKERAQRC
FVSYLRSIYLMKNKEVFDVFKLQLQEYAISLGLAVAPRVRFLSKAQTQRAGKERQREEEQ
SEGEDELRSFKAQLKGGVPQEESQNSDSGDDEESGNEGEALHLGADDDESDNDLRDLDLL
TVKRKDVFNLAGDTEISEEEEEVFKKKTEKETKFKEAKKTLKRNFQVNTKVAFSEEGEAV
QLWPPVQRAVTEEEGEDEETSGIDVQKARERLKREDQAFDKQEYSRKVKAKHREQRLKGK
AARREASRQGRTSDDEEDEVMAYLSNNSEDEFDPSTLPDPDKLPAGEEDEVTAAKRQHSD
DEEEEE
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggagaacaagggcgggacttccaccggcaagaagcccaaacccacgaagatggacgac
agcaccgaccccgtcaaaaacttcgagaaatggaagaaaaaatacaacaagacaaaagcc
gaagtgaagcgagagcgcgcgcagcagaagaagcccgagtggcaggtcgagagggagtac
atcgataagctcgtgagcaggtacggtgacatcaacgcgaaggaggcgatccggttttca
gacttccccatctcaaagaagaccttgcagggtttgcaggggggtcagtaccggcagccc
acggagattcagaggcagacgatcggcttcgcgttgctcgggaaagacgtcctcggcgcg
gccaagaccggctccgggaagactttagccttcctcatacctgtgctggagtgtctgtac
cgccaccagtggagctccatggacggcctcggcgctctcatcatatcccccaccagagag
ctcgcctaccagaccttcgaagtgctccgcaaggtgggcaagaaccacgagttctccgcg
gggctcatcatcggcggcaaggacctcgcggtcgagtcggagaggatccaccgcaccaac
atcgtcgtctgcacgccgggccggctgctccagcacatggacgagacggcgaccttccac
gcctctgacctccacatgctggtcctggacgaggctgaccgcatcctggacatgggtttc
gcagacacgatcaacgccatcgtggagaacctgcccaagtcccggcagacgctgctgttc
tccgccacgcagaccaagtcggtcaaagacctagcccggctcagcctcaaagacccagag
tacgtgtgggtccacgagaaggccaagttcagcacgccggccaccctggagcagagctac
gttgtgtgcgatctccaccagaaggtcaacatgctttactcattcatcaagagccacctg
cggaagaaggtaatcgtcttcttcgcctgctgcaaggaggtccagtacctgtaccgggtc
ctctgccgcctcagacccggcatgccgatcctggcgctgcacggcaagcagcagcagatg
aagcgggtggaagtctacaacgacttcctcaggaagcagaacgccgtgctcttcgccact
gacatcgccgccaggggcctggacttccccacggtcaactgggtgctgcagtttgactgc
ccggaggacggggacacctacatccatcgggtgggccggaccgcccggtacaaggagggc
ggggaggcactgctgctgctgctcccctcggaagagaagggcatggtgggccagctgcaa
gagaagaaggtgcccatcaataagatccaggtgaacccggacaagctgcagaatatccag
cagaagctggaggccttcctcgcccaggagaaggagcagaaggaaagggctcagaggtgc
ttcgtctcctacctgcgctccatctacctgatgaagaacaaggaggtgtttgacgtcttc
aagctccagctccaggaatacgccatctccctgggcctcgccgtggccccgagggtgcgc
ttcctgagcaaagctcagacacagagagctgggaaagagaggcagagagaggaggagcag
tctgaaggggaggacgagctgaggagcttcaaggcccagctgaaaggaggtgtccctcag
gaggaaagtcagaactcagattcaggcgacgatgaggagagcggtaacgaaggagaggca
ctccatctgggtgcagacgacgacgaaagtgacaacgatctaagagacctggacctgctg
accgtcaagagaaaagacgtcttcaacctggcgggggacacagagatttcagaggaggaa
gaggaggttttcaaaaagaaaacggaaaaagagacaaagttcaaagaagccaaaaagacc
ctcaagagaaacttccaagtgaacaccaaagtggcgttcagcgaggaaggggaggccgtg
cagctgtggcctccggtccagcgggcagtgaccgaggaagaaggggaggatgaggagact
tcgggtatcgatgtgcagaaggccagggagaggctgaaacgggaggaccaggcattcgac
aagcaggagtacagccgcaaggtgaaagccaaacacagggagcagaggctgaaggggaag
gcggccaggagggaggccagcaggcaaggccgcacatctgacgacgaggaggacgaggtg
atggcgtacctgtccaacaacagcgaagacgagtttgaccccagcaccctgccggacccc
gacaaactgcccgccggagaggaggatgaggtgacggcagccaaacggcagcacagtgac
gacgaggaggaggaggag
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