Cyclopterus lumpus (lumpfish): 117729479
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Entry
117729479 CDS
T09199
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117729479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117729479
03036 Chromosome and associated proteins [BR:
clum03036
]
117729479
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117729479
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
117729479
Chromatin remodeling factors
BAF complex
117729479
PBAF complex
117729479
GBAF(ncBAF) complex
117729479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
117729479
NCBI-ProteinID:
XP_034386475
Ensembl:
ENSCLMG00005002722
LinkDB
All DBs
Position
1:5563083..5577679
Genome browser
AA seq
1660 aa
AA seq
DB search
MRVGPCCSPRSRRSRAMSTPDPPMGGTPRPAPSPGPGPSPGSSHSMMGPSPGPPSQQGPS
GYVQDNMHPLHKSMESMHEKGMGEESRFIQMKGLSMRQGGHGGMGPPPSPLDQHSQGYHS
PLGGSDHSSPVPSNGPPSGPLLPSSSSGGPGSASAPLDGPSGDQHSLGPNNRPGPPGSSG
PGPSHGPILGPGVSVLESGGPPCPGGPGGPVGPTPFNQNQLHQLRAQIMAYKMLARGQPL
PDHLQMAVQGKRPMPGMQQQPMPSLAPGTGSGPIGGPAGPVPVPGSMGSGYSRVHGMMGP
NMPPPGPSGAAGMQGQNPNGPPKAWPEGPMVNAAAPSNAPQKLIPPQPTGRPSVHPAASP
IMAPQTQSPGQPAQPTPMMPYHAKQNRITPIQKPCGLDPVEILQEREFRLQARITHRIAE
LENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETALDAKAYKRSKR
QSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSITGKMQKLTKAV
ATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANL
TDLVRAHKAVQALKEIKKKKKKKKKKLEIAEAQTAAMGPDGEPLDETSQMSDLPVKVIHV
DSGNILTGVDAPKAGQLETWLEMNPGYEVAPRSDSEDSEEEEEEEEEEEPQPSAALVEEK
KKISDPDCEDVSEVDVRHILENAKQDVDDEYSGAAFDRGLQSYYSVAHAVTEKVDKQSSL
LINGQLKQYQVKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPSLI
IVPLSTLSNWVYEFDKWAPTVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKQ
VLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFL
LPTIFKSCITFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL
PEKVEYVIKCDMSSLQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNH
PYMFQQIEESFSEHLGFSGGIVQGLDLYRASGKFEVLDRILPKLLATNHKVLLFCQMTTL
MTIMEDYFAYRSFKYLRLDGTTKADDRGMLLKTFNEPGSDYFIFLLSTRAGGLGLNLQSA
DTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKV
IQAGMFDQKSSSNERRAFLQAILEHEEQDEVWGQEVCLRINEEDEVPDDETVNQMIARSE
EEFDQFMRMDLDRRREDARNPRRKPRLMEEDELPTWILKDDAEVERLTCEEEEGKLFGRG
SRQRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRHKKTTRKRKRDRDLDLPGPSSSSGG
RGRGDKDEDGRRQRKRGRPPAEKISPNPPALSKKMRKIVDAVIKYKDSASGRQLSEVFIQ
LPSRKELPEYYELIRKPVDFRKIKERIQGYRYRSLGDLERDVMLLFQNAQTFNLEGSLIY
EDSIVLQSVFTSLRQKVEKEEESEGEESEEEEEELEEGSESESRSVKVKIRLGRKDKGGD
RGKRSSRRTGRTRAKPVVSDDDSEDEQEEERSPSATDEES
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtaggtccctgctgctcaccgaggagcaggagatccagggcgatgtccacacca
gacccccccatgggaggcacccctcgcccagctccctcccctggtccaggtccctcccct
ggctcctcacacagtatgatgggccccagccctggccctccgtcccagcaaggcccctct
ggatacgtccaggacaacatgcaccctctgcacaaatccatggagagcatgcatgagaag
ggcatgggggaggagagccgtttcattcagatgaagggactgtctatgagacagggcggg
cacggcggtatgggccccccccccagccctctagaccaacactcacaaggttaccactct
ccattgggtggctctgaccactccagccctgtcccttcaaatggccctccctctggacct
cttctgccatcctcctcctctggtggtcccggctctgcctctgcacctctggacggcccc
agtggcgatcaacactccctgggtccaaataaccgtcccggacctccgggtagctccggc
ccaggccccagccacggacccatcctgggccccggtgtctccgtcctcgaatctggaggc
cctccgtgccctggaggtcctggtggtcctgtcggtcctactcctttcaaccagaaccag
cttcatcaactcagagcccagatcatggcttataagatgctggcccgggggcagcccctg
ccagaccacctccagatggcggtccaaggaaagaggccgatgcccgggatgcagcagcag
cccatgcccagcctggctcccggaactggaagcgggccgataggtgggccagcaggacca
gtaccagtgcctgggtctatgggctcaggctatagccgagttcatggaatgatgggtccc
aacatgcctcctccaggcccatcgggtgcagccgggatgcagggacaaaacccaaacgga
cccccgaaggcctggcctgaaggtcccatggtgaatgcagcagccccctccaacgcaccc
caaaagcttattccccctcagcccaccggtcggccctcagttcaccccgccgcctcccca
ataatggcgccacagactcagtcgcctggccagccagcacagcctactcccatgatgcct
taccacgccaagcagaaccgcattacccccattcagaaaccctgcggtctcgacccagtg
gagatactgcaggagagggagttcaggttacaggctcgtatcactcatcgtatcgctgaa
ctggagaacctgccgggctctctggctggtgaccttcgtaccaaagctactatcgagctc
aaagccctccgactgctgaacttccagagacagctgcgccaggaggtggtggtgtgcatg
cgtcgtgacacagctctggagaccgccctcgacgccaaggcctacaagcgaagcaagcgt
cagtctctgcgagaggcgcgcatcacggagaaactggagaaacagcagaagatcgagcaa
gagcgcaagcgcagacagaaacatcaggagtacctcaacagcatcctgcagcacgccaaa
gacttcaaagagtaccaccgctccatcacgggcaaaatgcagaaactgaccaaagcagtg
gcgacctaccacgccaacacggaacgggagcagaagaaagagaacgagcgcatcgagaag
gagaggatgaggaggctcatggctgaggatgaggagggctatcgtaaactgatcgaccag
aagaaggacaagcgtctggcctacctgctgcagcagaccgacgagtacgtcgccaacctc
accgacctggtacgagctcacaaagctgtgcaggccctcaaggagataaagaagaagaag
aagaagaaaaagaaaaagttggagatcgccgaggctcagaccgctgccatgggtcctgat
ggagagcctctggatgagacgagtcagatgagcgacctgcccgtgaaggtcatccatgtg
gacagcgggaacatcctgacaggagtggacgcccctaaagccggacagctggagacctgg
ctggagatgaaccccggttatgaggtggctcctcgctcagacagtgaagacagcgaggag
gaagaggaggaggaggaagaggaggagcctcagccatcggctgctctggtggaggaaaag
aagaagatttcagaccccgactgcgaagacgtgtcggaggtggacgtccggcacatcctc
gaaaacgctaagcaggatgtggatgacgaatacagcggcgcagcgttcgaccgaggcctc
cagtcgtattattctgtggctcacgctgtcaccgagaaggtggataaacagtcctctttg
ttaataaatggacaactcaaacagtatcaggttaaaggtctggagtggctggtgtccctc
tacaacaacaacctgaacgggatcctagcggacgagatgggtttggggaaaaccatccag
accatcgccctcatcacgtacctcatggagcacaaacggctcaatgggccctccctcatc
attgtgcccctctcaactctttctaactgggtgtatgagtttgacaagtgggcaccgacg
gtcgtgaaagtgtcctacaagggatctcctgctgccaggcgagccttcgtcccccagctg
cgcagtggcaagttcaacgttttactcaccacttacgagtacatcatcaaggacaaacaa
gtcctggccaagattcgctggaagtacatgatcgtggacgagggccaccgcatgaagaac
caccactgcaagctgacccaggtcctcaacacccactacctggccccgcggcgggtcctg
ctgacgggcacgccgctgcagaacaagctccccgagctctgggcgttgctgaacttcctg
ctgcccaccatcttcaagagctgcatcaccttcgagcagtggttcaacgccccgttcgcc
atgaccggggagaaggtggacctcaatgaagaggagaccatcctgattattcgtcgtctc
cacaaagtacttcggcccttcctgttacgcagattaaagaaggaagtggaggcacagctg
ccagagaaggtggaatacgtgatcaagtgtgacatgtcgtctcttcagagggttctgtac
aggcacatgcaggccaagggggtcctgctcaccgatggatcagagaaggacaagaagggt
aaaggaggcacaaagaccctgatgaacaccatcatgcagctgaggaagatctgtaaccac
ccgtacatgttccagcaaatagaggaatccttctctgaacatttaggcttctctggtggg
atagttcagggcctcgacctgtatcgggcctcgggaaagtttgaggtgttggatcgaatc
ctgccaaagctgctagccacaaaccacaaagtgctgctcttctgtcagatgaccacgctc
atgaccatcatggaggactactttgcctatcgcagcttcaagtatctgcgtctggatggc
accacgaaagctgatgacagaggaatgttgctgaagacgttcaatgaaccagggtccgat
tacttcatcttcctcctgagcacaagagccggaggactcggcctcaacttgcagtctgcc
gacaccgtggttatttttgactctgactggaacccgcatcaggacctgcaggcccaggac
cgagcgcaccgcatcggtcagcagaacgaggtgcgcgtgctgcgcctctgcacggtcaac
agcgttgaagagaagatcctggccgctgccaagtacaaactgaacgtggaccaaaaggtc
attcaggccggcatgttcgaccagaagtcctccagcaacgagcgcagggccttcctgcag
gccatcctggagcacgaggagcaggacgaggtctggggtcaggaagtgtgtctccgcatt
aacgaggaggacgaggtgccggatgacgagacggtcaaccagatgatcgcccggagcgag
gaggagttcgaccagttcatgcgcatggacctggaccgccgtcgcgaggacgcccgtaac
cctcggcgaaaaccgcgtctgatggaggaggacgagctgcccacctggatcctgaaggac
gacgccgaggttgagcggctgacctgcgaggaggaggaggggaagctgtttggacgtgga
tcccggcagcggaaggaggtggactacagcgactcactgacggagaagcagtggctcaag
gcgatagaggagggcacgctggaggagatcgaggaagaggtgcgtcacaaaaagacgacc
cgaaagaggaagcgggaccgcgacctggatctccccgggccctcctcttcctcgggggga
cgagggcgaggggacaaagatgaggatgggaggaggcagaggaagaggggacgaccgcct
gctgagaaaatctcccccaacccccccgccctctcaaagaagatgaggaagatcgtggac
gccgtcatcaagtataaagacagcgccagtggccgtcaactgagcgaggtgttcatccag
ctgccgtctcgaaaagagctgccggagtactacgaactgatccgcaagcctgttgacttc
aggaagatcaaggagaggattcaaggttatcgctaccgcagtctgggtgacctggagaga
gacgtcatgctgctcttccaaaacgctcagaccttcaacctggaggggtcactgatatat
gaagactccatagtcctccagtcagtgtttaccagtttgaggcaaaaggtcgagaaggag
gaggaaagtgagggagaggagagcgaggaagaggaagaggagctggaggaaggatcggag
tccgaatctcgctcagtgaaagtgaagatccgtctaggaaggaaggataaaggtggagat
cgagggaagagaagcagcagacgaacaggacgcaccagagccaaacctgttgtcagtgat
gacgactctgaggatgagcaggaggaggagcgctcccccagtgccactgacgaggagtcc
tga
DBGET
integrated database retrieval system
