Cyclopterus lumpus (lumpfish): 117729557
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Entry
117729557 CDS
T09199
Name
(RefSeq) cadherin-2-like
KO
K06736
cadherin 2, type 1, N-cadherin
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117729557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clum03036
]
117729557
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117729557
04090 CD molecules [BR:
clum04090
]
117729557
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Centrosome formation proteins
Other centriole associated proteins
117729557
Cell adhesion molecules [BR:
clum04515
]
Cadherins
Major cadherins
117729557
CD molecules [BR:
clum04090
]
Proteins
117729557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_3
Stevor
DUF2304
CD34_antigen
DUF5385
Motif
Other DBs
NCBI-GeneID:
117729557
NCBI-ProteinID:
XP_034386642
Ensembl:
ENSCLMG00005020259
LinkDB
All DBs
Position
4:3657708..3727390
Genome browser
AA seq
918 aa
AA seq
DB search
MHLLGIWMLMAALQLVALGREAERSSSGEQGSLPCTRGFTQEDYVIEVDRELAKGQAVFN
VSFTDCGRRKVWFQVSDSSDFGVSEDGAVYALRRLSLVGSGKAVEVVYAQDPQSKQVWKT
RVHLLVRPNGNSAGLEQVKHSDATLTQRVPEILFPWRSVVVRGDGTLRRVKRDWVIPPIN
VPENSRGQFPEELVRIRSDRDNNRLLRYSVTGPGADQPPTSIFIISPISGQLSVTKPLDR
EHISNFHLRAHAVDLNGNQVENPIDIVINVIDQNDNRPEFTHTIFNGSVPEGSKPGSFVM
TVTSVDKDDPKTANGMLRYKILSQNPQSPSSNMFTINNKTGDIITVAAGLDREKVTQYTL
IIQATDMEGNPTYGLSNTATTVIRITDVNDNPPEFTTDTFFGEVHENRVNVIVANLTVTD
KDQPHTSAWSAVYRIIAGDPTGRFSIPTDHTTNEGLLTVVKPIDFELTRSFMLTVEAENE
VPLARGIHLPRQSTATVSVRILDVNESPEFSPNPKSIKLEEGLPAGSLLTTFTAQDPDRF
LRQTVRYSKMYDPANWLEIDPVNGRISTIAILDRESPYVKNNLYNVTFMASDNGIPPASG
TGTLQMYLLDINDNAPHVFPPEVEMCEKPDPNAINITASDPDLTPNAGPFAFELANRPSD
VRRNWTLNRINGEYAQLRLRIGSLASGIYEVPIMITDSGNLPMSNTSYLRVKVCQCDHHG
DCVDMERIIAAGLGTGTIIAILICIIILLVLVLLFVMWMKRRDKERQAKQLLIDPEDDVR
DNILKYDEEGGGEEDQDYDLSQLQQPDALEPECIKVGIRRLDERPLHHDHQYPIRSAAPH
PGDIGDFIHEGLKAADNDPTAPPYDSLLVFDYEGSGSDAGSLSSLHSSSSCGDQDYDYLG
DWGPRFRKLADLYGGGDD
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttttggggatttggatgctgatggcggctctgcagctggttgctctgggcaga
gaggccgagcgctcgtcgtcaggcgagcaggggtcgttgccgtgcacgaggggcttcact
caggaggactacgtcatcgaagtggaccgggagctggcaaagggacaggctgtcttcaac
gtgagcttcacggactgcggtagaaggaaggtgtggttccaggttagcgactcatctgat
ttcggggtgagtgaggacggtgcggtctacgccctgcgccgcctcagcctggtgggaagt
ggaaaagctgtggaggtggtgtacgcccaagacccgcagtccaaacaggtctggaagacc
agagtgcacctcctcgtccgtccaaacggcaacagcgcaggacttgaacaggtgaagcac
agtgatgcaacactgactcagcgggtaccagagatcttgtttccatggcgcagcgtggtt
gtcaggggcgatggcactctgaggcgggtgaagagggactgggtcattccgcccatcaac
gtccccgagaactcacgaggacagttccccgaggagcttgtcagaatccgctcggaccgg
gataataaccggttgctacggtacagtgtgacgggtcccggggccgaccagcccccgacc
agcatcttcatcatcagcccaatctcgggccagctgtccgtcaccaagcctttggacaga
gagcatatctccaacttccatctgcgagcccacgcggtggacctgaatggaaatcaggtg
gagaaccccatcgacatcgtcatcaacgtcatcgaccagaacgacaacagaccagagttc
acgcacaccatcttcaacggctctgtacccgagggatccaagcctggatcctttgtgatg
acggtgacatccgtggataaggatgatccaaaaactgcaaatgggatgctgcgatacaag
attctctcccagaatccccagagcccctcctccaacatgttcactattaacaacaagacg
ggtgacatcatcaccgtggcagcgggcctagatcgggagaaagtcacccagtacactctg
atcatccaggccacggacatggaggggaaccccacgtacggcctgtccaacaccgccacc
actgtcatcaggatcactgacgtcaacgacaacccgcctgagttcaccaccgacacattc
ttcggggaggtccatgagaacagagtgaacgtcatcgtggcgaacctgaccgtgacggat
aaagaccagccgcacacatcagcatggagcgccgtgtaccgcatcatcgccggggacccc
accggacgcttctccatccccaccgaccacaccaccaacgaaggcctgctcactgtggtc
aagcccatagactttgagctgacccgctccttcatgctgacggtggaggcagagaacgag
gtcccgctggcccgtggaatccacctgccgcggcagtccacggcgaccgtctccgtgcgg
atcctggacgtcaacgagagtcccgagttcagccccaatcccaaatccatcaaactggag
gagggtctgcccgcggggtcactgctcaccaccttcactgcccaggaccccgaccgcttc
ttgagacaaactgtccggtactccaagatgtacgaccccgctaactggctggagattgac
cccgttaatggtcgcatttccaccatcgccatccttgaccgagagtctccctacgtcaag
aacaacctctacaacgtcacattcatggcctctgataacggtatccctcctgccagcggg
acaggcacccttcagatgtacctgctggacataaatgacaatgcacctcacgtgttcccc
cctgaggtggaaatgtgtgagaagcctgatccgaacgccatcaacatcacagccagtgac
cccgacctgaccccgaacgcgggacccttcgctttcgagctggccaatcggccatcagat
gtacgccgcaactggacgctgaatcgcatcaatggcgagtatgcccagctgagactgagg
atcggctccctggctagtgggatctacgaggttcccatcatgatcacagactccggtaac
ctgcccatgtccaacacgtcctacctgagagtcaaggtctgccagtgtgatcaccatggc
gactgtgtggacatggagcggatcatcgccgctggactgggtaccggaaccatcatcgcc
atcctcatctgcatcatcatactattagtgctggtgctgctgtttgtcatgtggatgaag
aggagggacaaggagcgtcaggccaagcagctcctcatcgacccagaggacgacgtgcga
gacaacatcctgaaatatgacgaggaggggggaggagaggaggaccaggactacgacctg
agtcagctgcagcagcccgacgccctggagccagagtgcatcaaggtggggatcagacgt
ctggatgagaggcctctccaccatgaccaccagtaccccatccgctctgccgccccccac
ccaggagacatcggagacttcatccacgagggcctgaaggcagcggacaacgaccccact
gcccccccctacgactccctgctggtgttcgactacgagggcagcggctccgacgccggc
tccctcagctccctgcactcctcctcgagctgcggcgaccaggactacgactatctcggc
gactgggggccgcgcttccgcaagctggccgacctgtacggcggaggggacgactag
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