Cyclopterus lumpus (lumpfish): 117729615
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Entry
117729615 CDS
T09199
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
clum03015
mRNA surveillance pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117729615 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
117729615 (eif4a3)
03015 mRNA surveillance pathway
117729615 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117729615 (eif4a3)
03041 Spliceosome [BR:
clum03041
]
117729615 (eif4a3)
03009 Ribosome biogenesis [BR:
clum03009
]
117729615 (eif4a3)
03012 Translation factors [BR:
clum03012
]
117729615 (eif4a3)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117729615 (eif4a3)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117729615 (eif4a3)
mRNA cycle factors
Stress granule specific factors
117729615 (eif4a3)
Spliceosome [BR:
clum03041
]
Complex C
Other components
EJC/TREX
117729615 (eif4a3)
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
90S particles
Helicases
117729615 (eif4a3)
Translation factors [BR:
clum03012
]
Eukaryotic type
Initiation factors
eIF-4
117729615 (eif4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
117729615
NCBI-ProteinID:
XP_034386768
Ensembl:
ENSCLMG00005011668
UniProt:
A0A8C2ZA05
LinkDB
All DBs
Position
1:27221875..27228629
Genome browser
AA seq
405 aa
AA seq
DB search
MAAVGLQRKRLLRDEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQ
RAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVL
LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVFDMIRRRSLRTRAIKMLVL
DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL
TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS
MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIG
RSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgtcgggctgcagaggaagaggctccttagggacgaggacatgaccaaggtg
gagtttgagaccagcgaggaggtggacgtcaccccaaccttcgacacgatgggcctgagg
gaggacctgctccgcggcatctacgcttacggttttgagaagccatcagcaatccagcag
agagccattaagcaaatcatcaaaggccgggacgtcatcgcccagtctcagtctggaaca
ggaaagacagccaccttctgtgtgtcggtgctgcagtgtctggacatccaggtgagggaa
acgcaggctctgatcctcgctccaaccagagagctggccggacagatccagaaggtgctg
ctggctctgggggactacatgaacgtccagtgtcacgcctgtatcggagggaccaacgtg
ggtgaggacatcaggaagctggactacggacagcacgtggtctcagggacaccgggacgg
gtgtttgatatgattcgccgcaggagtctgaggaccagagccatcaagatgctggttctg
gacgaggcggacgagatgctcaacaaaggtttcaaggagcagatctacgatgtgtaccgc
tacctgcctccggccactcaggtggttctgatcagcgccacgctgcctcacgagatcctg
gagatgaccaacaagttcatgaccgacccgatccgcatcctcgtcaaacgtgacgagctg
actctggagggcatcaagcagttctttgtggccgtggagagagaagagtggaagttcgac
actctgtgtgatctgtacgacacgctgaccatcacgcaggccgtcatcttctgcaacacc
aagaggaaggtggactggctgacggagaagatgagagaggccaacttcacggtgtcgtcg
atgcacggcgacatgcctcagaaagagagggagtccatcatgaaggagttcagatctgga
gccagtcgtgtgttgatctctacggatgtttgggctcgaggtctcgacgttcctcaagtt
tctctgatcatcaactacgacctgcccaacaaccgagagctctacatccacaggattggt
cgttctggccgctacggccgtaaaggcgtggccatcaactttgtgaagaacgacgacatc
cggatcctgcgtgacatcgagcagtactactccacccagatcgacgagatgcccatgaac
gtggccgatctgatctga
DBGET
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