Cyclopterus lumpus (lumpfish): 117729638
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Entry
117729638 CDS
T09199
Symbol
brat1
Name
(RefSeq) BRCA1-associated ATM activator 1 isoform X1
KO
K23112
BRCA1-associated ATM activator 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117729638 (brat1)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117729638 (brat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_2
HEAT
MMS19_C
CEP104-like_TOG
Cnd1
DUF3446
PDS5
IBN_N
Motif
Other DBs
NCBI-GeneID:
117729638
NCBI-ProteinID:
XP_034386801
Ensembl:
ENSCLMG00005002526
LinkDB
All DBs
Position
1:22115120..22121273
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AA seq
890 aa
AA seq
DB search
MDAECVSLLPGVCEVLAASGRSLPDDTSLEKLLDWFTGLTEAGGSLLDACPCLLDFISTV
VHNTASDPGVLSFTLRLTGLTAATEDGFQRLQERSVLNQVFHRQRWQEAGLWEDPCFRIG
WIQGLRSMLRHPKALGFFVQSDFIDPLLQLQTDASLFVASAANQMLAHILLFFQPASSPG
CNGADEKEEDGDGRTRTTSAEYTSAVAAISEYLKASLVPQKYTKLRQSLQILKLLALLLA
RAGPPLWDKLLQTVADSLEELVTAGCGQLTLPLMDVILAACSRSGADERVLDQHVLDQRV
PDQRVPDQRLSRLLSSMLNVDEPADLVHAAAAFLRRGHHSDIVHTARAVRILLLPLHIVT
GQSLLGTNTTADERQSSMVEQLKCKSSCISVICVCLTNTPQITLTPSDSLPCPPQLIVIA
VLSLLRICSGSSSSSSSSSSSSSSSPTGCSEVCRNVIGSGKVQKCALEALTALSSSPGAK
DAISEVFTVLMQYLDNPDSDATVLHKSYQALVKWMSVSPDLSVVTDPLRRGLEEVVKKRV
CDMRWEVRDSTVEFLGHLAGVPVTGTPALLGVRCTTPLLKEALQDTESYVRASAISALAK
TLTHSWQQGAALSQEETEIVSRLLEILSQDTEGFPRRAVVRYFISWFSLRSSSSSSSSSS
SSASLLTQCVRSVLSQGSADLDWEVKVHTLELAELLLDEAFSGHRGYGKDGAASDRTCTP
PTHAEGAESQLAGVVELGVISALLSGLVDCDRPVGLRACRLLVTLRDAVCPPSPDATAAA
VATVSCELPGWGWGQEVRKTLGMKGSDIAAEESIGGGGGVNEGGDGASVHVSVCEALTSL
GLDERLKVLTRSSDHVHNSPLSLLQDILTASAAHTHPDTQPGQEVIVDCY
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagagtgtgtgtcgctgctgcccggtgtgtgcgaggtgctggcggcctcgggg
aggtctctgcccgatgacaccagcctggagaaactgttggactggttcacagggctcacc
gaggccggtggatctctgctggacgcctgcccctgtctgcttgacttcatatccactgtg
gtccacaacacggcttcggaccccggtgtcctctccttcaccctcagactcaccggcttg
acggctgccactgaggacggcttccaaaggctccaggaacgctcggttctgaaccaggtc
ttccaccgtcagcgctggcaagaagctggactctgggaggatccctgtttccgaatcggc
tggatccagggcttacggagcatgctgcggcacccgaaggctctcggcttctttgtgcaa
tcagatttcattgacccgctccttcaactccagacagacgcgagtctgttcgttgcgtct
gccgccaatcaaatgctcgcccacatcctgctcttctttcagcccgcctcgtctccggga
tgcaacggcgcagatgagaaagaagaagatggcgacgggaggacgcgcaccaccagcgca
gagtacacgtctgccgtcgcggcgatctcggagtacctcaaggcgtcgctggttccccaa
aaatacacaaagctccgtcagagtctgcagatcctcaaactgctggcgctgctcctggcc
cgggccgggcctcctctctgggacaagctgctgcagacagtcgcggactctctggaggaa
ctggtgacggccggctgcggtcagctcacgctgcctctgatggacgtcattctggctgca
tgcagccgctccggcgctgacgagcgcgtcctggaccaacacgtcctggaccaacgcgtc
ccggaccaacgcgtcccggaccagcgcctcagccgtcttctgtcgtccatgttgaacgtt
gacgaacccgctgacctcgttcacgccgcagcggcttttcttcgccggggtcaccacagt
gacattgtccacacagcccgggccgtgagaatacttctgttgcccctccacatcgtgacg
ggtcaaagtctgctgggcacaaacaccactgcagacgagcgtcagtcttcaatggtggag
cagctgaagtgtaaaagctcctgcatctctgtgatctgtgtctgtctgacaaacacaccg
cagatcacactcacgccttccgacagcctcccctgtcctccacagttaattgtcattgca
gttctgtcattgttaaggatctgcagcggctcctcctcctcctcctcctcttcctcctcc
tcctcctcctcctcgcccactggctgcagtgaggtttgcaggaacgtaatcggctctggc
aaagttcagaaatgtgccctggaggctctgacggctctcagcagcagcccaggagcaaag
gatgccatcagtgaagtgttcacagttctgatgcaatatctggacaatcctgattctgat
gccacggtactccacaagtcctaccaggccttagtgaaatggatgagtgtgtccccagac
ctgtccgtcgtaacagacccgctccgacgaggtctcgaggaggtcgtgaagaagcgcgtg
tgtgacatgcgctgggaggtgagggactccacggtggagtttctgggacacctggcaggt
gttccagtaactgggacacccgctctgctgggcgtccgctgtaccacccccctcctgaag
gaggcactccaggatacggagagctacgtgagagccagcgccatctctgcactggcaaag
acactgacgcacagctggcagcagggggcagcgctgagtcaggaggagactgaaatagtg
agccggctgcttgagatcctctcccaggacacggaggggttccccaggagggccgtcgta
cggtacttcatctcctggttctctttgcgctcctcgtcttcgtcctcctcgtcttcgtcc
tcctccgcctcgctcctcacacagtgcgtgcgctccgtcctctcacagggcagcgccgat
ctggactgggaggtcaaagttcacacgctggagctggccgagctgctgctggacgaagcc
ttttcgggtcaccggggttacgggaaggatggcgcggcctccgaccggacctgcacccct
cccacgcacgcggagggcgcagagtcccaattggccggcgtggtcgagctgggtgtcatc
tcggcgctgctgagtggtctggttgactgcgacagacccgtgggtctgagggcctgccgc
ctgctggtgacactcagagacgcggtctgccctccgtcgccggacgccaccgccgccgcc
gtggcaacggtgtcctgtgaactgcccggctggggctgggggcaggaggtcagaaagaca
ctggggatgaaggggagcgacatcgcagcagaggagagtatcggaggaggaggaggagtc
aacgagggtggagacggtgcgagcgtgcatgtgagtgtgtgtgaggcgttgacgtctctg
ggtttggacgagaggctgaaggtcctcactcgaagcagcgaccacgtccacaactccccc
ctctctctgctgcaggacatcctgaccgcgagcgccgctcacactcacccagacacacag
ccggggcaagaggtcatcgtggactgctactga
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