Cyclopterus lumpus (lumpfish): 117729651
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Entry
117729651 CDS
T09199
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117729651 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117729651 (vcam1b)
04090 CD molecules [BR:
clum04090
]
117729651 (vcam1b)
04091 Lectins [BR:
clum04091
]
117729651 (vcam1b)
Cell adhesion molecules [BR:
clum04515
]
Immunoglobulin superfamily
VCAM
117729651 (vcam1b)
CD molecules [BR:
clum04090
]
Proteins
117729651 (vcam1b)
Lectins [BR:
clum04091
]
I-type lectins (Siglecs)
117729651 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
Ig_C17orf99
C2-set_2
Ig_4
ICAM_N
Receptor_2B4
C2-set
DUF7712
REJ
Motif
Other DBs
NCBI-GeneID:
117729651
NCBI-ProteinID:
XP_034386816
Ensembl:
ENSCLMG00005007004
LinkDB
All DBs
Position
4:complement(27737997..27758917)
Genome browser
AA seq
812 aa
AA seq
DB search
MSVCRISLLAALLLMSSCCVQGFHVEVFPRRPLFRLGQRQQLGCQVQDCPTMPSLSWSVL
GDRPLTASVSTNRTWSVMTFDPVMMEHEGALLCRVKCGGENKQIQISVQVYTFPSAPLIR
GQDHLSLGAESILTCQVLDLYPSELLTLNWLRGDAVLQSNMGAPGSGSVRSEYRFTPLEL
DLGGDISCRATLDLQELPAEDRTRVTTVSLNLLYAPVVKTLSDSVLVMAGSPLTLTCIVE
GNPEPTITWSFRSADGGSEWRGQGRQLVLTAVRPSEAGRYNCEARNSEGNQTAGVEVTVH
APPTNTSLSVSPGEGVLEGQQVTLTCWSDGTPPTTLVLRRKGVELQRTDPTFSSLSFSLS
SAQLEDSAHYQCEASNQHGSQLVTRRVTVSAHPLQVEVSPAVSAAERGSGLVLTCGASGC
LHPPTFTWKTDQDRIVLRGTERDGLSLLHLQDLDLQDEGGYSCEAECDSVVRTSTVQVQV
YSFPSDPVLENPGPVLLGQEAVLHCNVSSVLWANRLRLLWLSGNTTLMSESFGFSGSLQN
VSSVLQLRVQEDQHVLTCRAELLMEDGGVWRSRRTGVALQVHYPPRTTCLSVSPGEEVLE
GQQVTLTCHSDGAPATMLVLRREGAELQRTDPASSSLSFSLSSAQLEDSTHYQCEASNQH
GSQLVTRSVTVSAPPRNTTVLVLPSTVVQEGQNVTICCQTVSFPLSAVVLKKLTNGMELY
STNGTFLLVNVTARDSGLYQVNVTNDLGYQVKVFSISVRERSTSLPPSLSAIFVPVVCVA
TGLAAAALLLDFLRRSRKKGFYQLPQSAPTSA
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctgcaggatctctcttctcgcagctttgctgctaatgtcatcgtgctgcgtt
cagggcttccatgtggaggtgtttcccagaaggcctctgttcaggctggggcagcggcag
cagctggggtgtcaggtccaggactgccccaccatgccgagcctctcctggtccgtgctg
ggggaccgacctctgacggcctccgtcagcaccaacaggacctggtctgtgatgaccttt
gaccctgtgatgatggagcacgagggagctctgctgtgtcgagtcaaatgtggaggagag
aacaagcagatccagatatctgtgcaggtttacacattcccatcagcccctctgatcagg
ggccaggaccacctgagtctgggggcggagtccatcctcacctgccaggtgttagacctt
tacccctctgagctgctgaccctcaactggctcagaggtgacgccgtcctgcagagcaat
atgggagctcctggatctggctcagtccggtctgagtacagattcacccctctggaactg
gacttgggaggagacatcagctgcagggccacgttggacctgcaggagctgccagctgag
gacaggaccagagtgaccactgtgtccctaaacctgctctatgctcctgttgtgaagacg
ctatcagactctgtgttggtgatggccggctctccgctcactctcacctgcattgtggag
ggaaaccccgagccgaccatcacctggagcttcaggtcagcagacggtggatctgagtgg
cggggtcaaggccgacagctggtccttacagcggtgaggccgtctgaggccggacggtac
aactgcgaggcccggaactcagaggggaaccagaccgctggagttgaggtcactgttcac
gctccgcccaccaacacctccctctcagtgagtccaggtgagggggtgctggagggccag
caggtgacgttgacctgctggtcagatggaactccgcccaccacgctggtgctgaggagg
aagggggtggagcttcagaggactgaccccaccttctcctcgctttccttcagcctctcc
tccgcccagctggaagactccgcccactaccagtgtgaagcctccaaccagcatggatcc
caactggtcaccaggcgtgtcaccgtctcagctcacccactgcaggtggaggtgagtcct
gcggtctcagcagcagagaggggttcaggtctggtcctgacctgtggagcctccggatgt
ctccaccctcccacctttacctggaagacagaccaggatcggatcgtcctcagggggaca
gagcgggacggactgtccttgcttcacttgcaggacctggacctccaggatgagggagga
tacagttgtgaggccgagtgtgactccgtcgtcaggacctcgaccgtccaggtccaggtc
tactcattcccgtctgatccggttctggagaatcctggtcctgtcctgcttggtcaggag
gcggtcctccactgtaacgtgagcagtgtcctctgggccaatcgtttgaggctcctgtgg
ctgtcggggaacacaacgctgatgtcagagtcgtttgggttctccggttccctccagaac
gtttcgtctgtgcttcagctgcgggtccaggaggaccagcatgttctgacctgcagggcc
gagctgttgatggaggacggaggcgtgtggaggtccaggaggaccggcgtcgccctgcag
gtccactatcctcccaggactacctgcctctcagtgagtccaggcgaggaggtgctggag
ggccagcaggtgacgttgacctgccattcagacggagctccggccaccatgctggtgctg
aggagggagggggcagagcttcagaggactgaccccgcctcctcctcgctgtccttcagt
ctttcctccgcacaactggaagactccacccactaccagtgtgaagcctccaaccagcac
ggatcccaactggtcaccaggtccgtcacggtctcagctcctccgagaaacaccacagtc
ctcgtcctgccgtctacggtggtccaggagggacaaaatgtcaccatttgctgccagacc
gtcagctttccgctgtcagccgtggtcctaaagaaactgaccaatgggatggagctgtat
tcaactaatggcaccttcctattggtcaacgtcacggccagagactctggtctgtaccag
gtcaacgtcaccaacgacctcggctaccaagtcaaagtcttcagcatcagcgtcagagag
agaagcaccagtcttcctccaagtctcagtgccatcttcgtcccagtcgtctgtgttgcc
actgggctagcagctgctgctctgctcctcgacttcctgaggagatccaggaagaaaggt
ttctatcagctgccccagtctgcccctacttcagcctga
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