Cyclopterus lumpus (lumpfish): 117729679
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Entry
117729679 CDS
T09199
Symbol
sned1
Name
(RefSeq) sushi, nidogen and EGF-like domain-containing protein 1
KO
K24470
insulin-responsive sequence DNA-binding protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
clum04990
]
117729679 (sned1)
Domain-containing proteins not elsewhere classified [BR:
clum04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
117729679 (sned1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
NIDO
hEGF
EGF_TEN
fn3
EGF_2
EGF_CA
EGF_3
cEGF
SdrD_B
EGF_MSP1_1
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
117729679
NCBI-ProteinID:
XP_034386859
Ensembl:
ENSCLMG00005008186
LinkDB
All DBs
Position
4:complement(1455418..1476148)
Genome browser
AA seq
1389 aa
AA seq
DB search
MVLVLRALLPCFCTLLSLDLLPRVEPAVPLEDFYPFGQDKGDSQTIAQDDGGSRLVEISV
AFPFFGDKHTGLYVNNNGLVSFLREVSQFTPVAFPIAGDRRVVAPFWADVDNRRAGRVFY
RESKEPSILKRASGDVKTYFSEFPNFNATWALISTWHQVTFFGGNSLTPVNTFQVVLITD
GELSFTIFQYNNVTWTTGMHASSGGNLAGLGGIAAQAGFNAGDGKRYFNIPGSRTADVVN
VEGTTNVGYPGKWVFRIDDANVEVGGCNDSTSVCPHLRPCLNGGQCIDDCITGNPSFTCS
CLAGFTGRRCQIDVDECASHPCQNGGTCEDQINSFLCRCPPGYTGIQCETDIDECKDRPC
LNNALCVQGTDSFTCVCEAGYTGVLCETDINECESQPCQSGAECVDQVANFTCICPAAFT
GALCETELVVLQVNSTETENQTAACEQDGCTEHRICEDGGSGAYNCTCAPGFYGDECEEE
CLCQNGGVCVDINGTCDCPSGYTGLYCQFEVTQTPCSNSRTCPDGGPCLEYGGTYLCTCQ
TSAAELDHKDFYPYVQPRSVCDSSPCLNGGYCYERDGGYTCECKYGYRGKHCEKVRLNTC
ASGPCRNGGSCKEEAGSYRCVCPYRFTGKHCEVGKPDPCASSPCLNGGTCFHYIGKYKCE
CTEAFSGRHCEVSRSSVQTPAELGCGLPPQVKHAEVQFSSTTTGSMAVYVCHPGFISVPR
ATQSICGVQGDWSQPPICEEINECLSQPCLNGATCRNQVGSFQCECVDGFTGNRCQKGVN
GCLSEPCKHGGTCEDRPGSYLCHCSQGFKGQNCEIEQDGCESHPCLNGGVCRGYRRNYLC
ACKDGFFGDQCQMLENPCVLQPCGNRGLCRSDKRGNYNCVCRVGHTGKDCEKDLLPPSGL
HVLRVEENEVELRWDEPEPSHSLISGFLVTYGPLGQNDPKTDLLEKRQSSHVMRGLIPGL
LYNISTFSIKRNTNSNDNSQPATALIRTRPQPVEQLQVVNVSSSQVWLSWLVQVARHAAI
SGVRVSLWPSDGSEARTAVLNTSATEHSFSSLLPGLMYTVDVLTQSGVRPDEFPSTSHSA
GPLRFWTRPLPPQNLSMAHVTTNSALITWSRLPRNVPDGFVVNVTRGLNTRSRFLPNGKL
GSYTLRELTPGQNYYVALTSVKSTGQEQVHSIPQHLAFTTLPMGARSGRRERPGATGQGP
KVARTPPPSQPQDLGGSTETENAELPRYTELIDRRGKITAKFPHLARKAVRHRSRPDPPM
KLEKMEETTNKISLALEIQEALRAKPELPQDCRSLPCQNGGTCVSGGDSFICDCAAEFKG
RQCELLCQRVPHPCTRLYSETKSVPVWEGGVCHYLYKRTYKVQQDVCYREICEPTPPKKS
QIRRTNRQQ
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggtgttggtgctgcgagccctgctgccctgcttctgcaccctgctctccctggacctg
ctgcctagggtggaacccgccgtgcccctggaggacttctacccctttggccaggacaag
ggggactcccagaccatcgctcaggacgacggaggctccaggctcgtggagatctccgtt
gctttccccttctttggagacaagcacacgggactctacgtcaacaacaatggcctggtg
tctttcctgagggaggtgtctcagttcacgcctgtggcttttcccatcgccggggacagg
agggtcgtggcgccgttctgggctgatgtggacaaccgtcgagcagggagggtcttctac
agagagagcaaggagccctccatcctgaagagggcctcgggcgacgtcaagacgtacttc
tcagagttccccaacttcaacgccacgtgggccctcatctccacatggcaccaagttact
ttctttgggggcaactccctcacaccggtgaatactttccaagtggtgcttattacagac
ggagagctttccttcaccatattccagtacaataacgtcacttggaccacgggcatgcat
gccagcagtggagggaacctggctgggctgggtgggattgcagcgcaggcaggtttcaac
gccggagacgggaagcgctatttcaacatccccggctcgcgcacggctgacgtggtgaac
gtggagggaaccaccaacgtgggctacccggggaaatgggtcttccgtatagacgatgcg
aacgtggaagtgggtggctgcaatgattcaacatcggtgtgcccacacctgcgaccgtgt
ctgaacggcggccagtgcatcgacgactgcatcacaggcaacccctccttcacctgttcc
tgcttggccggcttcaccggccggcgatgccagatcgatgtcgatgagtgcgcctcacat
ccttgccagaacggggggacttgtgaagaccagattaatagtttcctatgtcgctgtcca
cctggatacactgggattcagtgtgaaacagacatcgacgagtgcaaagacaggccgtgc
ctcaacaacgcgctgtgtgttcaaggcactgacagtttcacctgtgtgtgtgaagcgggt
tacactggcgtcctgtgtgagacagacatcaacgaatgcgagtcgcagccgtgtcagagc
ggagcggagtgcgtggatcaggtggccaacttcacctgcatttgtcccgccgccttcacc
ggagcgctctgcgagacagagttggtggtgctgcaggtcaattcaaccgagacggaaaac
caaacagccgcctgtgaacaggacggctgcacggagcaccgcatttgtgaagacggcggc
tcgggagcctacaactgcacgtgtgctccaggcttctacggcgacgagtgtgaagaggaa
tgtctttgccagaatgggggtgtctgtgtggacatcaatgggacctgtgattgcccttca
ggctacacaggactctactgtcagtttgaagtaacccagacgccatgcagtaacagcagg
acgtgccctgatggcggcccttgtttggagtacggagggacctacctgtgcacatgtcag
acgagtgcagcggagctggaccacaaggacttctacccctatgtgcagccccgatcggtc
tgcgactcctctccgtgtctgaatggaggctactgctacgagcgggacggaggctacacc
tgcgagtgcaaatacggataccgggggaagcactgtgaaaaagttcgactcaatacctgt
gcttctgggccctgccgcaacggaggctcctgtaaggaagaggcagggagctacagatgt
gtgtgtccgtacagattcactgggaaacactgtgaagtggggaagccggacccgtgtgcc
tccagcccgtgtctgaatgggggcacatgtttccactacataggaaagtacaaatgtgaa
tgcacagaggccttcagcggccggcactgtgaagtaagcaggagctccgtacaaaccccc
gcagagctcggttgcgggctgcctcctcaagtgaagcacgccgaggtgcagttctcctca
acaacaacaggctccatggcggtctacgtatgccacccaggcttcatatctgtgcccaga
gccacccagagcatctgtggtgttcagggagactggagccagccacccatttgtgaggag
atcaacgaatgcctatcacagccttgtcttaatggcgctacctgtcggaaccaggtcgga
tccttccagtgtgagtgtgttgacggcttcactgggaaccgctgtcagaaaggcgtaaac
ggatgcctgtcggaaccctgcaagcacggggggacatgtgaggaccggcccggctcctac
ctctgtcattgttctcaaggcttcaaaggccagaactgtgaaatagagcaggacggctgt
gagtcccacccctgtcttaatggaggcgtgtgtcggggttacagacggaattatctgtgc
gcgtgcaaagacggcttctttggggaccagtgccagatgttggagaacccgtgtgtgctg
caaccttgtggaaaccgtggcctctgcaggagtgacaagagagggaactacaactgcgtc
tgcagagtcggacacacgggcaaagactgtgagaaagacctgttgcccccctccggtctc
cacgtgctgcgcgtggaggagaacgaggtggagctgcgctgggacgagccggagccctcc
cacagcctgatcagcgggttcctcgtcacgtacggacccctcggccagaacgatcccaaa
acggacctgctggagaagcggcagtcctcccacgtcatgcgaggcctgatacccggcctg
ctttacaacatctccaccttctccatcaagcgcaacaccaacagcaacgacaacagtcag
cctgccaccgcactcatacgcaccagacctcagccagtggagcagctgcaggtggtcaac
gtgtcctcctcgcaggtgtggctgagctggctggttcaggtggctcgtcatgcggccatc
agtggggtgcgcgtgtctctgtggccctcagatggcagcgaggctcgcactgccgtgctc
aacaccagcgccacggagcacagcttcagttcattactccctggtctgatgtacacggtg
gatgtgttgactcaaagtggagtcagaccggatgagtttccgtccaccagccactcagct
gggccactgcggttctggacaaggcctctccccccacagaacctctccatggcacacgtg
accactaactcagcactgatcacctggagccgcctccccagaaacgtcccagatggcttc
gtggtcaacgtgacccgagggttgaacaccaggagccgcttcctgcccaacgggaagtta
ggatcgtacaccctgcgcgaactgacgcccggacagaactactatgtggccctgacgtcg
gtgaagagcaccgggcaggagcaggtccacagcatacctcagcacctggccttcactacc
ttgccaatgggggccagatcagggagaagagagaggccaggcgccactggacaggggcct
aaggtggcacgcacacctcccccatctcagcctcaggacctgggaggctccacggaaaca
gagaacgcagagttgcccagatacacagaactcattgacagaaggggaaagataacagcc
aagttcccccacttggctcgaaaagccgttcgacatcgctccagacctgacccaccaatg
aaattagagaagatggaagaaacaacaaacaaaatcagccttgcactggagattcaagaa
gctttaagagcgaagcccgagttgccacaggactgccgcagtctgccctgccagaacggg
ggtacatgtgtgagcggaggcgactccttcatctgcgactgcgcagccgagttcaagggc
agacagtgtgaactgctgtgccagcgcgtgccgcacccctgcacccgtctctactccgag
accaagagtgtgcccgtctgggagggcggagtgtgccactacctgtacaaaaggacgtat
aaagtgcagcaggatgtttgttatcgagagatttgtgaaccgacgcctccaaagaaaagt
cagatcagaagaacaaacagacaacaataa
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