Cyclopterus lumpus (lumpfish): 117729716
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Entry
117729716 CDS
T09199
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum02010
ABC transporters
clum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117729716
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117729716
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
clum02000
]
117729716
Transporters [BR:
clum02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117729716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
117729716
NCBI-ProteinID:
XP_034386932
Ensembl:
ENSCLMG00005023149
LinkDB
All DBs
Position
1:8673323..8709713
Genome browser
AA seq
2268 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTVQLLIEIIWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGESPGVVGNFNDSIISRLFIDAKKILLYTQNDK
SYEGYKGLLRALRKLQKNTARFKLKDFLQDDETLSHFLHHNASLPRHALKQIVEADVNLE
KVLTKGFGFHLRDLCNSTPLEEFVHIADRNVSRLTQEIICKSSSDWLDQAQSHFLSNLDF
FKPIRKDVKSDPKVVQEVSAATDNLLESLGALAVELASMNSWKDMRKEILYLTVNATGSP
NQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNQGNSSDSDPLSAYDNSSTPYC
NKMMRSLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQEFSVLRDLGGM
WEEMRPKFWNFMENGEEMDMVRTLLQNNASSAFFNAQLSGTEWRVSDVSAFLMKVSEDQR
PAGSAYTWRDVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMGLLNNQKFWAGI
VFPDIAHSNSTDLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSY
LQDVIEHGIIRAITGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
IKGVVYEKEARLKETMRIMGLNNGILWLSWFISSLIPLLISAGLLVLLLKMGNLLPYSDP
GVVFLFLGSFGIVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYIGFGA
KVIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEGDNYNLTTSISLMLFDAVLY
GIMTWYIESVFPGQYGIPRPWYFPFTKTYWCGEKENTNMSTPLSKKGNAEAVCIEEEPSH
IEPGVYIENLVKVYSHGKKLAVDGLSLRFYKGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYIHGKDIRSELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLPEDKVKAEMEQ
IVNDVGLPHKRDSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDY
DLALQSCRNSASTVSYSKKPEKQDAVSESSSDAGLGSEPESETTTIDVSLISNLIFKHVH
EARLVEDVGHEITYVLPYQSAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVA
EDSGVDAVELSDGVVPTRTRRHHAFGDHQSCLKPFTEDDFDFNDSEESRETDLLSGTDGK
GSFQVKGWSLKRQQFIALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKY
PSLTLDHSMYGEQFTFISNDLPEDPHINKLLGALTENAGFGTRCMEGQPIPETPCTAVED
EWSVPEVSQSVRDMFDRGNWSMEDPSPMCECSCGGRKRMLPECPAGAGGLPPPQMKISEK
DTLQNLTGRNVSDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSSPLMAHTEDIDEA
IAQLTKRFRLERGTAADRFFHSLSSFIQGLDTKNNVKIWFNNKGWHSIGSFLNVMNNGIL
RASLQADQDPTKFGITAANHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVV
FLIQERVNKAKHMQFISGVQPLLYWLANFVWDMCNYIVPATLVIIIFMCFQQDAYVSTTN
LPVLALLLLFYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVATFVLELFGSN
EIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKNLF
AMAIEGVIFFCITVLIQYHFFFKARSSTSHLKPIGEEDEDVARERQRILSGGGHSDILEL
RQLTKIYKRKQKPAVDRLCVGIPRGECFGLLGVNGAGKTSTFKMLTGDSMVTGGEAYLAG
KSVTTEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRKLGL
VKYVDKSAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNAILSIIKEG
RSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDLRP
VMEFIERELPGSTLKEKHRNMLQYQLPTSLTSLARIFSLLSENKEALSIEDYSVSQTTLD
QVFVNFAKDQSDEDHLKEAHLNKRDAVVVDISQLNTFLTDNKTKESCV
NT seq
6807 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtctccactcaactgggtttactgctttggaagaacttcacttatcgacggaga
cagactgtccaactgctgattgagatcatctggcctctgttcatcttcttcatcctgatc
tcagtccggatgcattaccctccctacgagcaacatgaatgccatttccctaacaaggcc
atgccctcggcgggcaccctgccctgggtacaaggcatcatctgcaacgccaacaacccc
tgcttccgccatcccacccctggcgagagtcccggggtggtggggaatttcaatgattcc
ataatctcgcgtctgttcatcgatgccaagaagatcctgctctacactcagaatgataaa
agctacgagggctacaagggactgctgagggccctcaggaagctgcagaagaacactgct
cgtttcaagctgaaggactttttgcaagacgatgagaccctttcccacttcctgcaccac
aacgcctctcttcctcgccacgcgctgaaacagatagtggaggctgacgtcaatctggag
aaggtgctgactaaaggtttcggcttccatctccgagacctctgtaacagcacgcccctg
gaggagtttgtccacattgccgaccgcaacgtgtcccgtctgactcaagaaataatttgc
aagtcctccagtgattggctagaccaggcccagagccacttcctctccaacttggacttt
ttcaaacccattcggaaggatgtgaagtcagaccccaaagttgttcaggaagtctcagct
gcaaccgacaatcttctggagagcctgggagcattggccgtggagcttgccagtatgaac
agttggaaggacatgcgtaaggagatcctgtatctaaccgtaaatgccacaggctctcca
aaccagatgtaccaggctgtgtcgcgtatcgtctgcggacaccccgagggaggcggcctc
aaaatcaagtctctcaactggtacgaggacaacaactacaaggccctgtttggaaaccaa
ggcaacagcagcgacagtgatcccctctcagcttacgacaactcttccactccctactgt
aacaaaatgatgcgcagcctggagtccagccccatttccaggatgatctggagagctctg
aagcctctgctcatggggaagatcctgtacacgccagatactcccgctacacagagaatc
atccatgaggtgaataagaccttccaggagttcagcgtgctgagggacctcggagggatg
tgggaggagatgaggcccaaattctggaacttcatggaaaatggcgaggaaatggacatg
gtcaggacgctgctccagaataacgccagttccgcgttcttcaatgcccagctcagtggg
actgagtggcgtgtgtcagatgtgtcggccttcctgatgaaggtctcagaggaccaaaga
cctgcaggatccgcttatacctggagagacgtcttcaatgaaaccgaccaggccatccag
accatctcgcgcttcatggagtgtgtgaacctagacaagctggagcctgtcgctaatgag
gagagactggtcaacaagtccatgggtcttctgaacaaccagaagttctgggctggaatc
gtgtttcctgacatcgcccatagcaacagcactgacttgcctcccaacgtcaactataag
atccgcatggacattgataacgtggagaggacaaacaagattaaagacggctattgggac
cccggtcccagggcagaccccttcgaggaccttcgatatgtctggggcggattttcttac
ctgcaggacgttattgagcatggaatcatcagagccatcactggcaccaaggagaagaca
ggcgtctacattcagcagatgccctacccctgctatgttgatgacattttcctgcgggtg
atgagtcggtcgatgcctctcttcatgactctggcgtggatgtactcggtagccattata
atcaagggcgtggtgtacgagaaggaggcccggctcaaagagaccatgaggatcatgggg
ctgaacaacggcatcctgtggctcagctggttcatcagcagcttgatccccctcctgatc
agcgccggcttgctggtgctgttattgaagatgggaaacctgctgccttacagtgaccca
ggcgttgtgttccttttcctgggatccttcggcattgtaaccatcatgcagtgcttcctt
atcagcactctgttctctcgtgccaacctggcagctgcctgcgggggcatcatatacttc
acgctctacctgccctacgtgctgtgtgtcgcctggcaagactacattggctttggagca
aaagttattgtgagtctgctgtctcctgtggcgttcggttttggctgtgagtactttgcc
ctgtttgaggagcaaggggtcggcatccagtggtccaacctgctggccagccctctggag
ggggacaactacaacctgaccacctcgatctccctcatgctgtttgacgcggtgctctac
ggaataatgacctggtacatcgaatctgtgttccctggtcagtatgggatccccaggcct
tggtacttccctttcactaagacatactggtgtggagagaaagagaacaccaacatgtcc
acccctctgtcaaagaagggcaacgctgaagctgtgtgtatcgaggaggagccgagccac
atagagccaggtgtttacatcgagaatctggtgaaggtctacagccatggaaaaaagctg
gctgtggacggactgtccctgaggttctataaaggacagataacctccttcctcggccac
aatggagctggcaagaccacgaccatgtcaatcctgacggggttgttcccacccacatct
ggcacagcctacatccacggcaaggacatccgcagtgagctcagcaccatccggcagaat
ctgggcgtctgcccccaacacaacgtacttttcagcatgctgacggtggaggaacacatc
tggttctacgcccgtctgaaggggctgccggaggacaaggtgaaggccgagatggaacaa
attgtgaacgatgtcggactgcctcacaaacgagattcccgcaccagcacgctctccgga
gggatgcagaggaaactgtccgtggctctggcttttgtcgggggctcaaaggttgtgatc
ctggatgaacctacggccggagtcgatccctacgcacgcaggggcatctgggacctgctg
cttaaatacagacaaggccgcaccatcatcctgtccactcatcacatggacgaggccgac
atcctgggtgaccgcatcgccatcatttcccacggcaagctgtgctgcgtgggctcctcg
ctcttcctaaagacccaactgggcacgggctactacctgaccctagtcaagagagactac
gacttggcacttcagtcctgcaggaattctgccagcaccgtgtcctacagcaagaagccg
gagaagcaggacgctgtatcagagagcagttcagatgctggtctgggcagcgaaccagag
agtgaaaccaccaccattgatgtgtccctcatctccaacctgatattcaagcatgtccac
gaggctcgcctggttgaggacgttggccatgaaatcacttatgtcttgccctatcagtca
gctaaagacggagcctttgtcgagctcttccacgagctggatgacagacttaccgacctg
ggaatatccagctatggaatatctgataccaccctggaggagattttcttgaaagtggct
gaggacagtggagtagacgctgttgagctctcagatggagtcgtgccgaccaggacccgt
cgccatcatgcatttggagaccaccagagctgcctgaagcccttcaccgaggacgacttt
gatttcaacgactcagaagaatcccgagagaccgacttgctcagtggaactgatggcaaa
ggctcgttccaggtcaaaggctggagtctgaagaggcagcagtttattgcactactctgg
aaacgattcctctacgctcggcgctccaggaaaggcttctttgctcagattgttcttcca
gcggtgtttgtgtgtattgctctggtcttcagcctgattgtccctccgtttggaaagtac
ccaagtctgactctggatcacagcatgtacggggagcagtttaccttcatcagtaatgac
ttacctgaggaccctcatatcaacaaactactaggagctctcacagaaaacgcaggattt
ggaacgcgctgcatggaaggacaacccataccggagactccctgtacagcagtagaggat
gagtggtcggtcccagaagtctctcaaagtgtgagggacatgttcgacagaggcaactgg
tccatggaggatccctctcccatgtgtgagtgcagctgtggaggacgcaagaggatgctt
cctgagtgtcctgctggcgctgggggactcccaccacctcagatgaaaatcagcgaaaaa
gacactcttcagaatttgactggccgaaacgtctctgactatctggttaaaacctacgct
cagatcattggcaagagcctgaagaacaagatttgggtcaacgagttcagatacggtgga
ttctcactgggcgccaggagttctccgctcatggcccacacagaagacattgatgaagcg
atcgctcaactgacgaagcgtttccgtctggagagaggaactgcagcggatcggttcttt
cacagtctttccagttttatacaagggttggacaccaagaataatgtcaagatctggttc
aacaacaaaggctggcacagcatcggctctttcctcaatgtgatgaacaacggcatcctg
cgggcgagtctgcaagccgaccaagaccccacgaagtttggcatcactgccgccaatcac
ccgctcaacctcaccaaggagcagctgtcacaggtcgcattgatgacgacgtcggtcgat
gtgctggtttccatctgcgtgatcttcgccatgtcctttgtccctgccagttttgtggtc
ttcctcatccaggagagagtgaacaaggccaaacacatgcagttcatcagtggagtgcag
cctttactctattggctggccaactttgtctgggacatgtgtaactacatcgtcccggcc
acactggtcatcattatcttcatgtgtttccaacaagacgcctacgtgtccaccaccaat
ctgcctgtgctggcgctgctgctgctgttctacggatggtcgatcacccctctgatgtac
ccagcctcgttcttcttcaagatccccagcacggcctacgtggttctcaccagtgttaac
atactgatcgggatcaacggcagcgtcgccacatttgtactggagctgtttggaagcaat
gaaattggtggcatcaacgacatcctgaagaacgtgttcctcatcttccctcacttctgt
ctgggcagagggctgattgacatggtgaagaatcaggctatggcagacgctttggagaga
tttggtgaaaaccggttccgctcccctctggcctgggacatggtgggaaagaacctgttt
gcaatggccatagagggcgtgatcttcttctgcatcaccgtcctcattcagtaccacttc
ttcttcaaggccaggtcatccactagtcacctgaagcctattggagaagaagacgaggac
gtggccagagagcgacagagaatcctgagtggaggaggacactcggacatcctggagctc
agacagctcaccaagatttacaaaaggaaacagaagccggcagtggaccgactgtgtgtt
ggcatcccccgtggagagtgcttcggtttgctgggggtgaatggggcagggaaaaccagc
acctttaaaatgctgacaggagactctatggtcaccggtggagaggcttacctggctggc
aagagtgtcacgacagagatcgatgaggtgcaccagaacatgggctactgtcctcagttt
gatgccatcaacgacctgctgaccggcagagagcacctcgagttttacgccatcctgaga
ggagtgcctgagaaggaagtctgtgaggtggcagaatggggcatccggaagctgggtttg
gtcaagtatgtggacaagtcagccggcagctacagcggaggaaacatgaggaaactgtct
actgccatcgctctcataggaggaccacctgtcgtctttctggatgaaccgaccacaggc
atggatcctaaagcccgtcgtgctctgtggaacgcaatcctgagcatcatcaaagaagga
cgatctgtagtcctgacctctcacagcatggaggagtgtgaggcactttgcaccagaatg
gccatcatggtcaacggcaggttccgctgtctgggcagtgtgcagcatctcaaaaacagg
ttcggcgatggctacaccatcatccttcgggttgctggcccagacccagaccttcggccg
gtgatggagttcatcgagcgggagctgcctggcagcacgctgaaggagaaacaccgcaac
atgctgcaataccagctgcccacctccctcacctccctcgcccgcatcttctccctgctc
tctgagaacaaggaggccctcagcatagaggactactccgtctcacagacaactttagac
caagtgtttgtaaatttcgccaaggaccaaagtgatgaggaccatttgaaagaggcccat
ctgaacaaacgggacgctgtggtagtggacatttcccagcttaacactttccttacggac
aacaagaccaaggagagctgtgtctga
DBGET
integrated database retrieval system
