Cyclopterus lumpus (lumpfish): 117729993
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Entry
117729993 CDS
T09199
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb isoform X1
KO
K10357
myosin V
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
117729993 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117729993 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
clum04131
]
117729993 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
clum03029
]
117729993 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
clum04812
]
117729993 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
117729993 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
117729993 (si:dkey-110c1.10)
Membrane trafficking [BR:
clum04131
]
Others
Actin-binding proteins
Myosins
117729993 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
clum03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
117729993 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
clum04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
117729993 (si:dkey-110c1.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
nSTAND3
AAA_22
Myosin_N
AAA_16
Motif
Other DBs
NCBI-GeneID:
117729993
NCBI-ProteinID:
XP_034387320
LinkDB
All DBs
Position
4:22256512..22273240
Genome browser
AA seq
1657 aa
AA seq
DB search
MTSMELYSKGASVWIPDPDAVWVSGLLLQDYNPGEKHLLLQLSDGTEAQYPVVSPSDLPP
LGNPDILEGGNDLTALSFLHEAAVLHNLRVRFLDYSSIYTYCGIVLVAINPYDQLPIYGE
EVIDAYSGQDMADMEPHIFSVAEEAYRTMTREEKNQSIIISGESGSGKTVSAKFTMRYFA
VVGGASQQTSVEDRVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFGRKGDIIGANMRT
YLLEKSRVVFQASAERNYHIFYQLCASRELPEMRSLKLDAPEHFRYTSQGGEMQIPGTDD
LSDLERTRNAFTVLGVQPDQQMELFTILSAVLHLGNVNIQASGRNSDRSYIDADDRPLAV
FSKLLGVEGPQMAHWLCHRRLAVGGELLVKPVSGQQAVEARDALAKHIYGQLFSWTVQRL
NSALRSQRGQAKSFTGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFHLEQEEYV
REELAWSRIEFSDNQQCINLLDGHLGLFDLLDEECRMPKGSDESYVLKLYDQHLTSKKHP
HFQKPRMSNSAFVVLHFADTVQYECDGFLGKNRDTVFEELINILKASQSELVAELFQQLG
TASSVANGSVRSGKRAAREHKLTVGFQFRQSLQMLMDTLNNTTPHYVRCIKPNDLKEAFM
FDPRRTVQQLRACGVLETIRISAAGFPSRWTYEEFFSRYRLLLRGAQGQEEAQASCRQAL
PRLIPDPDQYCFGKTKVFFRAGQVALLERLRAERLRVAAVIIQSRVTGWLARVRYTRIRW
ATLTIQRYCRGALARRLALTLRYTKAAVVIQKTYRMVAVRQLFLLIRQATITIQAFTRGT
SARRRHRLLVAERAAVVLQARVRGWLARRSYGRVRAAVVFMQCCARRGAARRELMTLKTE
ARSVERFRELNKGMEVKLMQLQLRADQEARDGAALKETLHAERGATSAELEALRATVQKL
ESQKRDKPPPCPVISEKEVEERKKAEEKAAQEVLQLTQELQALQREKDSFCKEREDLSAR
LFDHEKAQEECVHQAVSHASAGLRAELDEERRKYQGLLREFTRLEQRYDNLREMSLLTEH
TKGHRRTDSTQSLSLEPHSPTPLSPQSLTPLSLSPFPPAFPSPEEVRRVSVTSPSVERRA
SVWSIETPMDRLMEMMDVAKGPAVKMKGEDLAHAYDAVRVANKFLESQLRNQCSQTEEEL
EALRCQLSQAIFGSSSAAQQQELQGLLEAREQECVRLRRELKELKNTASLRRLLAQVFDP
ETSSCPSRTKPAAVTGLLECRKRDEAKLLKTLITDIRGDGALSLPPGLPASVLFLCVRQA
DCSGDQTLARSLCSATVTAMKAALKKHSNDVDMTALWLKNTCLLHDLLTQHSPKQTLDSD
DVVPLTVDLSDLIRALSDLCIQAYQQLLSITEKRLQNIIVPALLESENIPGLSGSAGKLG
TSRKRAGSDPRSAGVDAPTLAAVLRELGALHTALSRQDLPPTLMEQAFNQLTFLISASAF
NSLLLRKDMCCWSRGMQIRYNVSLLEEWLRSRGLQTGGAVATLEHLIQAVQLLQAGKKTE
SDARALVQTCTALSSQQIVKILTLYTPHSDLDERVTVNFIRTVQGLLKGRSEGQPPQLLM
DVRRVFPVTFSYSPPTVFRAEQLVIPDSLKISFLRRA
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgatggagctatacagtaagggggcaagtgtgtggattcctgacccggatgca
gtttgggtgtccggcctgctccttcaggactacaatcctggagagaaacatctcctcctt
cagctctccgatggaacggaggcccaatacccagtggtgtccccctctgatctcccaccg
ctggggaaccccgacatcctggagggaggaaatgatctgacggctctgagcttcctccat
gaagctgcggtcttgcacaacctgcgcgttcgattcctggactacagcagcatctacacg
tactgcggtattgtgttggtggccatcaatccctacgaccagctccccatatacggagag
gaggtgatcgacgcttacagcggccaggacatggccgacatggagccgcacatcttctcc
gtggcagaggaagcctaccgcaccatgaccagggaggagaaaaaccagtccatcatcatc
agtggagagtcgggctcggggaaaacggtctcggccaaattcaccatgcgatactttgct
gtggtcggaggagcctcacagcagaccagcgtggaggacagggttctggcctccaaccca
attatggagtctatcgggaatgctaaaaccactcgaaatgacaacagtagtcgttttggg
aagtacatcgagatcggcttcggcagaaaaggggacatcatcggggcaaacatgaggacg
tacctactggagaagtctagggttgtcttccaagcgtcagcagagaggaactaccacatc
ttctaccagctgtgtgcctccagagagttgcctgaaatgagatccctcaaactagacgca
cctgagcatttccgctacaccagccagggaggagagatgcagattcctggtactgatgac
ttgtcggacctggagcgcacgcgcaatgctttcaccgtcctaggtgtgcagcctgaccag
cagatggagctcttcaccatcctgtctgctgtcctgcacctgggaaacgtcaacatccaa
gccagtgggagaaactctgaccggagttacattgatgcagacgaccgacctctggctgtc
ttctccaagctgttaggagtagaaggacctcagatggcccactggctgtgtcatcgcaga
ctggccgtagggggggagttgctggtcaagcccgtgtccggccaacaggccgtagaagcc
agagatgctctggccaaacacatctacggccagctgttcagctggaccgtccagaggctg
aactctgctctgcgctcacagaggggacaggccaaatcctttacaggggtcctagacatc
tacgggttcgagacctttgaccggaacagtttcgagcagttctgcataaattatgcgaat
gaaaaactgcaacagcagttcaacaggcatgtgttccacttggagcaggaggagtacgtc
cgggaggagctggcctggagcaggattgagttcagtgataatcagcagtgcatcaatctc
ttagatggacatctgggcctctttgatcttttagacgaggagtgccggatgcccaaaggt
tcagatgagagctacgtgctgaagctgtatgatcaacacctgacgagcaagaagcaccct
cacttccagaaaccccgcatgtccaacagcgcctttgtcgttctgcacttcgctgacacg
gtgcaatatgaatgtgatggctttttgggcaagaatcgagatacagtctttgaggagctc
attaacatcctcaaagcaagtcagtctgagctggtggctgaattgttccagcagctggga
actgcttcctctgtggccaatggaagtgtccgctcggggaaacgagccgccagagagcac
aaactgacggtgggcttccagttccgtcagtccttacagatgctgatggacactctgaac
aacaccactcctcactatgtccgctgcattaaacccaacgacctcaaagaagctttcatg
tttgacccccggaggacagtccagcagttgagagcttgtggggtgctggagacgatccgc
atcagcgctgcaggttttccgtccaggtggacgtacgaggagttcttcagcaggtaccgt
cttctgcttcgaggggcccaaggtcaggaggaggcccaggcctcgtgcagacaagccctg
cctcggctcatcccggacccggaccagtactgctttggaaagaccaaagtgttcttccgg
gccggtcaggtggctctcctggagaggctgagagctgagaggctgcgggtggctgctgtg
atcatccagagccgggtcacagggtggctggctcgggttagatacaccaggatccgctgg
gcgactctcaccatacagagatactgcagaggagctctggccagacgactggccctgacg
ctgcgctacaccaaggccgccgtcgtaatccagaagacgtaccgcatggtggcggtgaga
cagctgttcctcctgatccgacaggccaccatcaccatccaggccttcaccaggggcacg
tcggcacgccgcagacacagactgttggtggcggagagggccgcggtggtgcttcaggcg
agagtgcgcgggtggctggcgaggcggtcgtacgggcgtgtgcgcgccgcggtggtgttc
atgcagtgctgcgcgcgccgcggggccgccaggagagagctgatgaccctgaagaccgag
gcccgctcagtggagaggttcagagagctcaacaagggcatggaagtcaaactgatgcag
ctgcagttgagagcagaccaagaggcccgggatggtgcggctttgaaagagaccctgcac
gcagagcgaggggccaccagcgctgagctggaggctttgagggccacggtgcagaaacta
gagagccagaaacgggacaagcctccgccctgccccgtcatcagtgagaaggaggtggag
gaaaggaagaaagctgaggagaaagcggcccaggaggtgcttcagctcacccaagagttg
caagccctgcagagagaaaaggacagtttttgcaaagagagagaggatctctccgctcgc
ttgtttgatcacgaaaaagcacaagaagagtgtgtgcaccaggctgtatctcacgcgagt
gcaggtctgagggcggagctggatgaggagaggagaaagtatcagggtctcctgagagag
ttcaccagactggagcaaagatacgacaacctcagggagatgagtctgctcactgagcac
accaagggccaccggaggacggactccacccagagtctgagcttggagcctcactctccc
actccgctgtcaccccagtctctcaccccactctcactgtcacccttcccacctgccttc
ccttccccggaggaggtccgcagggtcagcgtgacgtctccctccgtcgagaggagagcc
tcagtgtggagcatcgaaacgccaatggaccggttgatggagatgatggacgtggccaaa
ggcccggcggtgaagatgaaaggagaggacctggcacacgcttacgacgctgtacgagtg
gccaacaagtttctggagagccagttgcgtaaccagtgcagtcagacggaggaggagctg
gaggctctgaggtgccaacttagtcaagcgatctttggttcttcctctgctgcacagcaa
caggagctgcagggactactggaggcccgggagcaagagtgtgtccgattgaggcgagag
ctgaaggagcttaaaaacacggcctcactcaggcggctgctggcgcaagttttcgacccg
gagacgtcctcctgtccgtcccgcaccaagccggcagccgtcaccggtttgctggaatgt
cggaagagagacgaagccaagctgctcaagaccctcatcacagacatccgtggcgacggc
gccctgtctctgcctcccggcctgcccgccagcgtgctcttcctctgcgttcgtcaggcc
gactgcagcggagaccaaacgctggctcgctcgctctgtagcgccaccgtcaccgctatg
aaggccgctcttaagaaacatagtaacgatgtagatatgacggctctgtggctgaaaaac
acctgtctgctgcacgacctgttgacccagcactccccaaaacagaccctcgactcagac
gacgtggttccactgaccgttgatctgagcgacttgatccgcgccctgagtgacctctgc
atccaggcctatcagcagctcctttccatcactgaaaaacgtctgcaaaacatcatagtc
ccggctctgttggagagcgagaacatcccgggtctgtctggctcagcggggaagttggga
acgtccagaaagcgagcggggtcggaccccaggagcgcgggagtcgatgctccgactctg
gcggcggtgctgagggagctgggagcccttcacaccgcgttgtcccgtcaggatctgccc
ccgacgctgatggagcaggccttcaaccagctcaccttcctcatctccgcctccgctttt
aacagcctcctgctgaggaaggacatgtgctgctggagccgtggcatgcaaatacgctac
aatgtgagtcttctggaggagtggctgcggagccgcggtctgcagacagggggcgctgtg
gccacactggagcacctcatccaggcagttcagctgctgcaagccgggaaaaagactgag
tcggacgcccgggccctcgttcagacctgcactgccctgtccagccagcagattgtgaag
attctgaccctctacactccccacagtgaccttgatgaaagagtcacagtgaatttcatc
cgtactgtccaggggctcctcaaaggccgttctgagggtcagcctccgcagctcctcatg
gatgtgaggcgagtgtttccagtcacgttttcctactcgccacccaccgtcttccgtgcc
gagcagttagtcatcccagactccctcaagatctcctttctccgcagagcctag
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integrated database retrieval system
