Cyclopterus lumpus (lumpfish): 117730004
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Entry
117730004 CDS
T09199
Symbol
polrmt
Name
(RefSeq) DNA-directed RNA polymerase, mitochondrial isoform X1
KO
K10908
DNA-directed RNA polymerase, mitochondrial [EC:
2.7.7.6
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
clum03029
]
117730004 (polrmt)
Enzymes [BR:
clum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117730004 (polrmt)
Mitochondrial biogenesis [BR:
clum03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Mitochondrial RNA polymerase
117730004 (polrmt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol
RPOL_N
PPR_2
PPR_3
Motif
Other DBs
NCBI-GeneID:
117730004
NCBI-ProteinID:
XP_034387342
Ensembl:
ENSCLMG00005000389
LinkDB
All DBs
Position
4:22687504..22722236
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AA seq
1370 aa
AA seq
DB search
MSLLRVCAFAKRLSRRSLFDKCAARASLADRCQLRVPTRDGAVRRISETHLQLQRRNVSF
VIPKRDDAKKRGLEQSQLLDVLEARIQQLRSDIVLDVRHAKVKFLKAPSLGRGVLSGQGP
KGAAPKEKTDVPKSGKTLKAPSKSQPSRWMEKLTQEKENKLTKQQHLRQKIQKNVKEKPT
DKLKGSKSGSALPGTSHKTISKTAPSIKNRGRGKLSDEIRAAVTTIEAAAVAGTAAATRK
ESKGKQKGSKKTVAGKKGQEQSVIDARVTAEEQAKVEELERRLSQQVSRWTSSSNPLLLL
QEDVEAAACGDIQLSIRSYLEACVFAGDVERAQRFLLSQHRVMSRRKHLNTGVYNIMMRV
WAKKGTLNQIGRIFSLLEEASLKPNLGSYCTALECMGRNPNCSPNVITRCLSQMKEYGLS
VDDLFSRCVFRQDERDMVLKAVHVVQPDYRPRLKAEATPWSSSLVHDFYTQRSDHQYPKL
DFTQEELQERFNLQLSMEQACTATINSVEAAKPVTEHMARMRELLADQRAKWQKILLQAL
RESKMILSNTNSKDYRLNLYPYLCVLGDKEYVDIMIQSVANLPPSGESLKILARELGNRV
YTKYSVRQKHQSQMVEKLRNIYNSYTDLLAKDTKEYSVLPSEHWCKLELDQTSGPSLQGG
ETHWPYIVSLELGTYMVELMVKNLKINSDTLNSAFERKSIPILYHMYTFRSTRQVGFIKP
HPILTQMQQDAMETELTFDSFVIPMLCPPVPWTSVKFGAYLLTPTKLMRTVEGATQHEVL
LEKCQNLLPVLDSLNQLGNCAWRVNKPLLDIIISIFNDRGCDKLDIPPPLSEAPKIPHFT
AHDPAYTASEKAHMKREVINAKKKCNEMHSLRMDALYKLSIANHMRDEIFWFPHNMDFRG
RTYPCPPYFNHLGSDVTRAVLLFAEGKPLGPKGLDWLKIHLVNLTGLKKRSSLEGRLEYA
NAIMEDVLDSADDPLDGKKWWTNADEPWQALACCMEIANAVRSPDPTRFISHFPVHQDGS
CNGLQHYAALGRDVIGATSVNLLPCDEPQDVYSGVAQQVEEFRARDAQSGMKIAQVLEGY
ISRKVVKQTVMTVVYGVTRFGGRLQIEKRLKEIDEFPKEHVWDASHYLVRMVFSGLKEMF
TGTREIQAERSLAANRNATHRRCVSSGRCVGTAQSEMKNPLPHHTLDWLTESARLISKSG
HTVQWVTPLGLPIIQPYHRTRNQVLKSTMQHINLQISHDARERPDTVKQKNAFPPNFIHS
LDSTHMMLTALHCYSAGLTFVSVHDCFWTHALTVDTMNKVCREQFVALHSQPILQELSNY
LLQKYCTGFPTEAKTKKYQEYRRLMLLLAKVPQTGDFDLRRVKESTYFFS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcctccgggtatgtgcctttgcaaaacgtctgagtcgtcgcagtttatttgat
aagtgtgccgcgcgcgcgtctctggcggaccgctgtcagctgcgcgtgccgacgagagac
ggcgcggtgaggcgaatatcagagacacacttgcagcttcaaaggagaaatgtttcattt
gtgatccccaagagagacgatgctaagaaacgcggactggagcagtctcagctgttagac
gtgcttgaggccaggatccagcaactccgatccgacatcgttttagatgtccgtcacgca
aaggtgaaatttctcaaagccccctctttgggacgaggggttttatctggtcagggtccc
aagggcgccgccccgaaggagaaaactgacgttcctaaatccggaaagactctcaaagcg
ccgtctaaatctcaacccagccgctggatggaaaaactgactcaggagaaggaaaacaaa
ctcacaaaacagcagcacctccgtcagaaaatacagaagaatgtcaaggagaagcctacc
gacaaacttaaagggagcaaaagcggctcggcgctcccgggtacttcacacaaaactata
tccaagaccgctccctcgattaagaacaggggtcgcgggaaattgtctgatgagattcgg
gccgcagtcactacgatagaggcggcggcggtggcggggacggccgccgcgacacgtaaa
gaatctaaagggaaacagaagggctctaaaaagacggttgccggtaaaaagggccaggag
cagtccgtcatcgatgcccgggtcacggccgaagagcaggccaaggtggaggagctggag
aggaggctcagtcaacaggtgagccggtggacgtcgtcgagcaacccgctgctgctcctc
caggaggacgtggaggcggccgcgtgcggcgacatccagctgagcattcgctcttacctg
gaggcgtgcgtgttcgccggggacgtggagagggcgcagcgcttcctgctaagtcagcac
agagtcatgagtcgacggaaacacctgaacacgggcgtctacaacatcatgatgagggtg
tgggccaagaagggcacgttaaatcagatcggccgcatatttagtctgttagaagaggct
agtctgaagccgaatctgggatcctactgcactgccctggagtgtatgggccgcaatccc
aactgctccccaaatgtcatcacaaggtgcctgagccagatgaaggagtatggcctctct
gtggacgacctgttcagccggtgtgtgttccggcaggacgagcgggacatggtgctgaag
gccgtgcacgtcgtccagcccgactaccggccccgcctcaaagcggaggcgactccgtgg
tcctcatcgctggtccacgacttctacacacagaggtcagaccaccagtaccccaaactg
gacttcacccaggaggagcttcaggagcgtttcaatcttcagctcagcatggaacaggcc
tgcactgccaccatcaactctgtggaggctgccaagcccgtaactgaacacatggcgaga
atgagggagctgctggcggatcagcgggcaaagtggcagaagatcctcctccaggccctg
agggagagtaagatgatcctgtctaacaccaactccaaggactaccggcttaacctttat
ccctacctctgtgtgctgggggataaagagtacgtcgacatcatgatacagagcgtcgcc
aacctgcctcccagcggagagtcactgaagatcttggccagagagctgggcaaccgggtc
tacaccaagtactctgtgcggcagaagcaccaaagccagatggtggaaaagttgcgcaac
atttacaactcttacacagacctgctggccaaagacacaaaggagtacagcgtcctgccc
agcgagcattggtgcaagctcgagctggaccagacctcaggaccctcgctgcagggagga
gagacccactggccgtacatcgtgtccctggagctgggcacctacatggtggagttgatg
gtcaagaacctcaaaatcaacagcgacaccctgaactctgctttcgagagaaagtccatc
cccatcctgtaccacatgtacaccttccgcagcacacgacaggtcggcttcatcaaaccc
caccccatcctgactcagatgcagcaggacgccatggagaccgagttgacctttgactcc
ttcgtgataccgatgctttgccctcccgtgccctggacgtctgtcaagttcggagcctac
ctgctgacgccgaccaagctgatgcgcacggtggaaggggccacgcagcacgaggtgttg
ttggagaagtgccagaacctcctgccggtcctggactctctcaaccagctgggcaactgt
gcctggcgtgtcaacaaacccttattggacattatcatctccatcttcaacgatcggggc
tgcgacaagctagacatccctcctcctctgtcggaggcccccaaaataccccacttcacc
gcccacgatcccgcttacacggcctctgagaaagcccacatgaagagggaggtgatcaac
gccaagaagaaatgcaacgagatgcacagccttcgcatggacgcgctgtataaactctcc
attgccaaccacatgcgggatgagatcttctggttccctcacaacatggacttccgggga
cgtacctacccctgtcctccgtacttcaatcacctgggcagtgatgtcacgcgggctgtc
cttttgttcgccgaggggaagcccctcggtccgaaggggctggactggctgaagatccac
ttggtcaatctgacggggctgaagaagaggagctccctagagggacggctggagtacgcc
aatgcgatcatggaggacgtcttggactcggcagacgaccctctcgacggtaagaagtgg
tggacgaatgcagatgagccttggcaggctctggcctgctgcatggagatcgccaacgcc
gtgagatctcccgatccaacgcggttcatctcccattttcccgtccaccaggacggctcc
tgtaatggcctccagcactacgctgccctcggaagagatgttattggggccacgtccgtc
aacctcctgccctgtgacgagccccaggacgtgtacagcggagtagcgcagcaggtggag
gagttccgagcgcgggacgcacagagcggcatgaagatcgcccaggtcctggagggctac
atcagcaggaaggtggtgaagcagaccgtgatgacggtcgtgtacggggtcacgcgcttc
gggggacgcctccagatcgagaagcggctcaaggagattgacgagttcccgaaggagcac
gtgtgggatgcgtctcattacctggtgcgtatggtgttcagtggcctcaaggagatgttc
acagggaccagagagatccaggcagagaggagtctggcagcaaatagaaacgccacccac
cgccgctgtgtgtcctctgggcgatgtgtcggcacggcccagtctgagatgaagaatccc
cttccccatcataccttggattggctgacggagagcgccaggctcatctccaagtcgggc
cacaccgtgcagtgggtgacgccgctgggtttacccatcattcagccctaccaccgcaca
cgcaaccaagtgctgaagagtaccatgcaacacatcaacctccagatcagccacgacgcc
agagagaggccggacacggttaaacagaagaacgccttcccaccaaacttcattcactct
ctggactccacccacatgatgctgacggctctccactgctacagtgccggcctgacgttc
gtctcggtccacgactgcttttggacccacgccctcactgtggacaccatgaacaaggtc
tgtcgggagcagttcgtggcgctgcacagccagccgatcctccaggagctgtccaactac
ctgctgcagaaatactgcaccgggttcccgactgaagccaagaccaagaagtaccaggag
tacaggaggctgatgctgctgctggccaaagtgccccagacaggtgattttgatctccgg
cgggtgaaggagtccacttatttcttcagctga
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integrated database retrieval system
