Cyclopterus lumpus (lumpfish): 117730119
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Entry
117730119 CDS
T09199
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117730119 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
117730119 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117730119 (lsm7)
03041 Spliceosome [BR:
clum03041
]
117730119 (lsm7)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117730119 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
117730119 (lsm7)
Spliceosome [BR:
clum03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117730119 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
117730119
NCBI-ProteinID:
XP_034387553
LinkDB
All DBs
Position
4:18557860..18560232
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AA seq
103 aa
AA seq
DB search
MADKEKKKKESIFDLSKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QLKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQQQDG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagagaagaagaaaaaggagagcatcttcgacttgtcgaaatacatcgac
aagcccattcgtgtgaagtttcaaggaggacgagaggccagcggggtcctgaaggggttt
gatcctctgctgaacctggtgttggacggcacaatcgagtacatgcgtgatccagatgac
cagctgaagctgacagaagacaccaggcagctggggctggtggtctgcaggggaacctcc
gtcgtgctaatctgtcctcaggacggcatggaggccatacccaacccatttgtacagcag
caggatggctaa
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integrated database retrieval system
