Cyclopterus lumpus (lumpfish): 117730149
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Entry
117730149 CDS
T09199
Symbol
prpf38a
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117730149 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117730149 (prpf38a)
Spliceosome [BR:
clum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117730149 (prpf38a)
Complex C
U4/U6.U5 tri-SnRNP related factors
117730149 (prpf38a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Plasmodium_Vir
Motif
Other DBs
NCBI-GeneID:
117730149
NCBI-ProteinID:
XP_034387604
Ensembl:
ENSCLMG00005008823
LinkDB
All DBs
Position
4:complement(8693898..8698039)
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AA seq
312 aa
AA seq
DB search
MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKYVGGV
FGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTAVDCYKYL
EPLYNDYRRVKSQNRNGEFELMHVDEFIDQLLHEERMCDIILPRLQKRHVLEEAEMLDPR
ISALEEDLDEVESSEEEDEEEDKPERLQTPEPHRRRDGYRDNDRPRRSPSPRYRRSRSPR
RRSRSPKRRSPSPRRDRHRSKSPRRHRGRSRDRRHXRSKSPGHHRSHRHRSHSKSPERSS
KKSHKKSRRGNE
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacagaaccgttaaagatgcgaacagcatccacgggaccaacccgcagtatctg
gtggagaaaatcatccggactcgaatctacgagtctaaatactggaaggaggagtgtttc
ggtctcacggctgagctggtggtcgacaaagccatggagctgaagtatgtcggtggagtt
tttgggggaaacataaagcccactcctttcctctgcctcacgctgaagatgctgcagatt
caaccggaaaaagacatcattgtcgagttcatcaaaaatgaggatttcaaatatgttcgc
ttacttggagcgatgtacatgaggttaactggcactgcagtggattgctacaaatacctg
gagccgctgtacaacgattacagaagagtcaagagccagaaccgaaatggagagtttgag
ctgatgcacgtggacgagttcattgaccagcttcttcatgaagagaggatgtgtgacatc
attctgccccgacttcagaaaagacacgtcctcgaggaggctgagatgttagatccacgt
attagcgctctggaggaagatctggatgaggtggagagcagtgaagaagaagatgaggaa
gaagacaagccggagagactgcagacccctgagccgcacagaaggcgtgacggttaccgt
gacaacgacaggcctcgtcgctctccatcgccgcgttacagacgcagtcgctcacccaga
cggaggagccgatctccaaagaggcgaagcccgtcgccccggagagaccgccatcgcagc
aagagcccccgtcgacaccgcggccggtccagagacagacgccacnnccgctccaaatct
ccaggtcaccacagaagccacagacatcgcagccactcaaagtccccagagaggagttca
aaaaagagtcacaagaagagtcgaagaggaaacgagtga
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