Cyclopterus lumpus (lumpfish): 117730331
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Entry
117730331 CDS
T09199
Symbol
slc6a11a
Name
(RefSeq) solute carrier family 6 member 11a isoform X1
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
117730331 (slc6a11a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
clum02000
]
117730331 (slc6a11a)
Transporters [BR:
clum02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
117730331 (slc6a11a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
117730331
NCBI-ProteinID:
XP_034387855
Ensembl:
ENSCLMG00005012037
LinkDB
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Position
5
Genome browser
AA seq
1204 aa
AA seq
DB search
MEGPFLKGNSIEMPGPDRILVKKTQLLDRGQWGNKLEFLLAVAGTLVGLGNLWRFPYLCY
KNGGGAFLVPYFLFLLSCGIPMFLLETAMGQFTSQGCITCWRHFCPLFEGIGYATQVVIA
YAAVSYIVIQAWAFFYLFSSFSAEIPWASCRNTWNTESCVEFGKTNASSNWTANATTPAT
EFWERRVLGISKGIDEIGSLRWELALCLLLAWILCYFCVWKGVKSTGKVVYFTATFPYVM
LVVLLARGLTLPGAMDGIAFYLYPDPKRLVDPQVWMDAGAQVLFSFGICQGSLTALGSYN
QYNNDCYKDTFILCLVNGGSSFVAGFAIFSVLGFMSYEQGLPISEVAASGPGLAFIAYPR
AVAMMPFPQLWSICFFVMVILLGADTQFVSLECLMTSVTDMFPTVFRRAYRRELLLLCLC
SVFFFLGLLLVTEGGLYFLQLFDHYVCSGNNLFLLSVCQSIAIGWIYGADRLFDNIEDMV
GYRPWSIMKYFWLYITPTVCLGTFIFSLVRYKPLKFNKTYVYPTWAYALGWSLGLFCVLL
VPLWMIIKLTQMKGTIGQKLRQLCRPEIKTPSTGKQPEQCPLNPDNTLTPANNEYKASGG
AEMEMQISMADSLCRLDHLPPKATSQTVEDRGKWGSKKEFILSTAGAIIGLGNVWRFPYL
CYKNGGGAFFIPYILFLAVCGIPLFILEISLGQYTSQGGIMCWRKICPLFEGMGYASQLI
IFYGCISYIVILAWAFLYLFSSFSGELPWATCNNTWNSDSCVVLNNFNATVNWTLPVNAS
SSSSSSVSEFWQRRVLNISTGIEALGNIQWELSLYLLLAWIICYFCVWKGVRSTGKVPYV
TATFPFIMLAVLFIRGMTLPGAFQGIKYYLYPNPARLADPQVWIDAGTQIFYSYAICLGC
LTTLGSYNKYNNNCYRDSFYLCLLNSGTSFISGFAIFSILGYMSEKQGLDISLVAESGPG
LVFIVYPQAVTLLPWPQVWSVCFFAMIILLGIDGQFIGLESIMTSLSDVYPSQIRKGFRR
ELLLMLICASGYVFGLLLVSQAGAYILQIFDHYVCSGPTLLLMAIFQSVVIGWIYGAERF
CDNIEDMIGYKPLTLIKYCWLYGTPLICSGTLVFLLLRYTPMRFNNSYVYPWWAYCIGWF
LAMSSLMMIPVTMVWKLSQVKGNLWQRLKMSSQPAGDYPVGTKEIASISTSLHFPAGGQD
GNVY
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggagggaccattccttaaaggaaacagcattgagatgcccggtccagatcggattctg
gtgaagaagacacaactgttggatcgaggccagtgggggaacaagttggaatttctgttg
gctgtagcaggaactctggttgggctaggaaacctgtggaggttcccctatttgtgctac
aaaaatgggggaggtgcatttctggttccttacttcttgtttctgctctcttgtggcata
ccgatgttcctcctggagacggccatgggacagttcacatctcaaggatgtattacctgc
tggaggcacttctgccccttgtttgaaggtattggctacgctacccaggtcgtgattgcg
tatgctgccgtgtcatacattgtcatccaggcgtgggccttcttttacctgttctcgtcc
ttcagcgctgagatcccatgggccagctgcagaaacacctggaacacagagtcttgtgtt
gaatttggtaaaacaaatgcgtcatcaaattggacagcaaacgcaacaacgcctgcaaca
gaattctgggagagacgagtgttgggcatatctaaagggattgatgagattggtagcctg
aggtgggagttggccttgtgtctcttactggcgtggatcctttgctacttctgtgtttgg
aaaggagtgaaatccactggaaaggtggtttactttactgccactttcccttatgtgatg
ctggtagttctgttggctcgtggactcactttaccgggagctatggacggcatagctttc
tatctgtatcccgacccgaaaaggttggtggaccctcaagtttggatggatgcaggtgca
caagttcttttctcgtttgggatttgtcaggggagtttgacagctttgggcagttacaat
caatacaataatgactgctacaaggacacgtttattctatgtttggtgaatggcgggtca
agctttgtggcaggatttgccatcttttcagttttgggcttcatgtcttatgaacaagga
ctgccaatatctgaagtggcggcttctggacctggcttggcatttattgcctatccacga
gcagtagccatgatgccttttcctcagttatggtctatatgtttcttcgtcatggtcatc
ttgttgggtgcagatacacagtttgtgagtctggagtgtctgatgacttccgtgacggac
atgttccccaccgtgtttcgaagagcttatcgccgagagttgctgctgctgtgcctctgc
tctgttttcttcttcctcggtctccttctcgtcacagagggaggcttatatttccttcaa
ctttttgaccattacgtttgtagtggcaacaatcttttccttctttcagtgtgtcagtcg
atagcaatcggatggatatatggtgcagatcgtctctttgacaatattgaagacatggta
ggttaccgtccatggtccataatgaagtacttctggctttacattacacccactgtttgt
ctgggtaccttcatcttttcattggtgcgatacaagcctctcaagttcaacaaaacctac
gtctatccgacctgggcttacgctttgggctggtcccttggactgttctgtgttctcttg
gttcctctgtggatgatcattaaacttacgcagatgaaagggactatagggcagaagctc
aggcagctttgtcgccctgaaatcaagactcccagcacagggaagcaacctgagcaatgc
cctttgaacccagacaacactcttactccagctaacaatgaatacaaagcaagtggtgga
gctgagatggagatgcaaatcagtatggcagactctctgtgcaggctggaccatctccct
cctaaggctacttcacaaacagttgaggaccgtggcaaatggggcagcaaaaaggagttc
atcctgtctacggctggtgctattattggacttggaaatgtgtggagatttccatatctc
tgctacaagaatggtggtggtgcattcttcattccttacattctgttccttgcagtctgt
ggtattcctctgttcatactggagatatcactgggccagtacaccagtcagggaggaatc
atgtgctggcggaaaatctgccccttgtttgaaggcatgggatacgccagccaacttatc
attttctatggatgtatcagctacattgtgatcttagcctgggcttttctctaccttttc
tcgtccttctctggtgagctgccatgggccacctgtaataacacatggaattcagattct
tgtgtggtattgaacaactttaatgccactgttaactggactttgcctgtgaatgcatca
tcatcatcatcatcatctgtatcagagttctggcaacgacgtgtgctcaatatatccact
ggcatagaggctctgggaaacatacagtgggagctttctttgtaccttcttctggcctgg
atcatctgctacttctgtgtctggaagggagtgagatcaacaggaaaggtgccttacgtc
acagcgacattccccttcatcatgttggcagtgctttttattagaggaatgacccttcct
ggagccttccaaggtatcaagtactacctgtaccccaatcctgcacggctcgctgacccg
caggtttggattgatgctggaacccaaatattttattcctatgccatatgtttgggatgc
ctgactacgcttggaagctacaacaagtacaacaacaactgttacagagactccttctat
ctttgcttgttgaacagcgggaccagctttatatctggctttgccattttctcaattctg
ggctacatgtctgaaaaacagggtctcgacatttctttagttgctgagtcaggccctggc
cttgtgttcatagtctacccacaagctgtgactcttctgccgtggcctcaggtctggtct
gtgtgcttcttcgccatgatcatcttgttaggaatagacggacagtttattgggcttgaa
agcatcatgacttcactgtcagatgtctacccttcccagatccgaaaaggatttcgcaga
gagcttctcctgatgctaatctgcgcttctggctatgtgtttggcctcttgttggtgtca
caggctggcgcatacattctgcagatctttgatcactatgtttgcagtggtcccactctt
cttctgatggcaatcttccagtcagtggttattggatggatttatggtgctgaacgcttc
tgtgacaacattgaggacatgatcgggtacaaacctctcacactgatcaagtactgctgg
ttgtatggaacccctcttatttgcagtggcacacttgtgtttttgctcctgagatacacc
cccatgaggttcaacaactcctatgtgtatccttggtgggcgtactgtatcggctggttt
ctggccatgtcctctcttatgatgattccagtgaccatggtttggaaactgtcccaagta
aaagggaatctctggcagcgtctcaagatgagctcccaacctgcaggtgactatccagtg
gggacaaaggaaattgcaagcatcagcacctcactacacttccctgctggtggacaagat
ggcaatgtgtactga
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integrated database retrieval system
