Cyclopterus lumpus (lumpfish): 117730517
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Entry
117730517 CDS
T09199
Symbol
stau1
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clum01009
]
117730517 (stau1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117730517 (stau1)
Protein phosphatases and associated proteins [BR:
clum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117730517 (stau1)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
117730517 (stau1)
mRNA cycle factors
Stress granule specific factors
117730517 (stau1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
DND1_DSRM
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
117730517
NCBI-ProteinID:
XP_034388151
Ensembl:
ENSCLMG00005018555
LinkDB
All DBs
Position
5:15889434..15897305
Genome browser
AA seq
691 aa
AA seq
DB search
MSQLQFQCPASPMPAACAPLQLGQPQSCYSIPCSSGTLPSESASQPIRSSALPAGSATPY
ITTTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVGLTLGDQHWEA
EGTSIKKAQHSAAASALTETTLPKPTVRTPRNTADGMTHTMELNALCMKLGKKPMYKPID
PYPGMRPPNFNYNIRAPGPYQRSMQQYYYPFPPVGPMIYHMELSIGGQQFTGKGRTRQLA
KHEAAAKALKVLHKEPILQQMPVMNGEPEEENLNKSEISQVFEIALKRNLPVNFEVLKEE
GPPHMKSFVVRVTVGEFPGEGEGKSKKIAKKLAAAAVLEELRRLPHIPSVEKTLPRIKKK
TKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVTVCGQ
TAEGMGPSKKVAKRNAAEKMLELLGYKVPQPQPPKPALKTDEKTPVKKPGDGRKVTFFEP
GSGEEVALSSKEEDFRLPYMSHQQLPAGILPMVPEVAQALGAFHASQTKDYSRAVPNPGN
ATITAMIVNELLYTGTSLTAETILKNKNNLNQLPHGPLTRPSEQLGFLASVQSLQVEYKD
FPKNNKNEFVSLINCSSHPPLISHGIGKDVESCHDMAALNILKLLSELDQQSSERTGNGP
VSRCGKQEMEGDLHLKQANSSTLAQTLDGTV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagctccagtttcagtgtccggctagccccatgcctgctgcctgtgccccactg
cagctggggcagccacagtcttgctacagcatcccctgttcttcaggcactctaccctcg
gagagcgccagccagcccatcaggagctcggctctccctgcaggctcagccactccctat
attaccaccacagtatctaacatggcaaaccctaaagagaagacccccatgtgtttggtg
aatgagttagcccgtttcaacaagattcaaccggagtataagctgctgtgtgagcaagga
ccagctcactccaagattttctcagttgggctcacactgggtgatcagcactgggaggcc
gaggggacgagcatcaagaaagcccagcattctgcagctgcatctgcccttactgagacg
acacttcccaaacccaccgtgagaacgccccgcaacacagcagatggcatgacacacacc
atggagttaaatgcactatgtatgaagcttggtaaaaagcctatgtataaacccatcgac
ccatatccggggatgagaccgccaaacttcaattacaacatccgggctccaggaccttac
cagcgctctatgcaacagtactattacccatttcctcctgtgggaccaatgatataccat
atggagctttccatcggaggccagcagtttactgggaagggacgcacgcggcagttggcc
aaacatgaagctgctgccaaggccctaaaagtgcttcataaggagccaatattgcaacag
atgccagtgatgaacggagagcccgaggaggagaacctcaacaaatcagaaattagtcaa
gtgtttgaaattgcactgaaacgcaacttacctgtcaactttgaggttttaaaagaagaa
ggccctccccatatgaagagttttgtagtgcgcgttacagttggggagttccctggagag
ggcgaaggaaagagtaaaaaaattgccaagaagcttgcagcagctgcagtgctggaggag
ttgaggaggctaccccatatacccagtgtggaaaagacactgccacgcatcaaaaagaaa
acaaaatccatcattaagctgcagacaagcccagaatatggccagggaatgaatcccatc
agccgcctggctcagatccagcaggccaagaaggagaaggaaccagagtacagcatggtg
acagagagaggtctacctcgtcgcagggagttcgtcatgcaggtgacagtgtgcggccag
actgccgaaggaatgggacctagtaagaaggtggccaagaggaacgcagcagagaaaatg
ctggagctcttgggatataaagtgcctcagcctcagcctccgaaaccggcacttaaaaca
gatgaaaagaccccagtgaaaaaacctggtgatgggcgcaaagtgaccttttttgagcct
ggctctggagaggaggtggcattgagttccaaggaggaggacttccgcctgccttacatg
agccaccagcagctgcctgcaggtatcctgcccatggtccctgaagtggctcaagcactc
ggggccttccacgcatcccagactaaggactacagtcgagctgtacccaacccaggcaat
gccacaatcactgccatgattgtcaacgagctgctctacacagggacatcactgactgct
gagactatcctaaagaacaaaaataatctgaaccaacttccacacggacccctcaccagg
ccttcagaacagctcggctttcttgcatcggtgcaaagcctgcaggtggaatacaaagat
tttcccaaaaacaataaaaatgagtttgtatcactcattaactgctcctcccatccaccg
ctcatcagtcatgggatcgggaaagatgtagaatcctgtcatgatatggccgcattgaat
atattgaagttgctctcagagttggaccagcagtcaagcgaaaggacaggaaatggacca
gtctctcggtgtggcaagcaggaaatggagggtgacttgcacctcaaacaggctaactca
agcacactggcacagaccctggatggcactgtttaa
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