Cyclopterus lumpus (lumpfish): 117730615
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Entry
117730615 CDS
T09199
Symbol
shmt2
Name
(RefSeq) serine hydroxymethyltransferase, mitochondrial isoform X1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum00260
Glycine, serine and threonine metabolism
clum00630
Glyoxylate and dicarboxylate metabolism
clum00670
One carbon pool by folate
clum01100
Metabolic pathways
clum01200
Carbon metabolism
clum01230
Biosynthesis of amino acids
clum01240
Biosynthesis of cofactors
clum04981
Folate transport and metabolism
Module
clum_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
117730615 (shmt2)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
117730615 (shmt2)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
117730615 (shmt2)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
117730615 (shmt2)
Enzymes [BR:
clum01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
117730615 (shmt2)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
117730615
NCBI-ProteinID:
XP_034388323
Ensembl:
ENSCLMG00005012306
UniProt:
A0A8C2ZGF6
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Position
5:19011825..19033233
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AA seq
501 aa
AA seq
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MLSFALRRVTRPLCQRAPVRLSVRGQQSHAATRAVDEDRPWTGQESLAEDDPEMWDLLLK
EKDRQCRGLELIASENFCSRAALEAQGSCLNNKYSEGYPGRRYYGGAEVVDQIELLCQKR
ALDSFDLDPALWGVNVQPYSGSPANFAVYTAVLKPHDRIMGLDLPDGGHLTHGYMSDVKR
ISATSIYFESMPYKLNTATGLIDYDQMEMTAKLFRPKLIIAGTSAYARLIDYARIKKLCT
DIKAYMLADMAHISGLVATKAIPSPFEHSDLVTTTTHKSLRGVRAGLIFYRKGVRSVDKK
GKEIMYDLEDKVNFSVFPSLQGGPHNHAIAGVAVALRQTQSPMFKEYISQVLMNAKSMAA
ALLSKGYTLVSDGTDNHLVLVDLRPKGIDGARAERVLELVSITANKNTCPGDKSALTPGG
LRLGAPALTSRQFKEADFVQVVELMDEGFKIALDVKKKTGKLQDFKNFLLQDPETVARIA
NLRHRVEAFARPFPMPGFHDH
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgctctccttcgccctgagacgagtcacgcggccactgtgccagcgagccccggttcgt
ctcagtgtacgcggtcagcagtcccacgccgccacccgtgcagtggatgaagatcgtccg
tggacaggccaggaaagcctggctgaggacgaccccgagatgtgggatctgctgctaaag
gagaaggacaggcagtgccgcggattggagctcattgcgtctgagaatttctgcagtcga
gcagctctggaagctcagggctcctgtctgaacaacaaatactctgaaggctacccaggg
agaagatactatggtggagcagaagtggtcgatcaaattgagctgctgtgtcagaaacga
gccttggactcctttgacctggacccagctctgtggggtgtcaacgtccagccgtactct
ggttctcccgctaactttgctgtctacacggccgtgctcaaaccccatgaccgcatcatg
ggcctggacctgcctgacggaggacatctgacacatggctacatgtccgacgtgaagagg
atctctgcaacatcaatctatttcgagtccatgccatacaagctgaatactgcaacagga
ctcatagactacgaccagatggaaatgacggccaagctgttcaggcccaagctcatcatc
gctggcaccagtgcctatgcccgcctcattgactacgcccgcatcaagaagctgtgtact
gacattaaggcctacatgcttgctgatatggcccatatcagtggcctggtggctaccaaa
gctatcccttctccctttgaacattctgacctggtcaccactaccacacacaagtccctc
cgaggagtcagggctggcctcattttctatcgtaagggagttcgctcagtggacaagaag
gggaaggagatcatgtacgaccttgaggacaaggtcaacttctctgtgttcccctccctg
cagggtggaccacataatcacgccattgctggtgtggctgtggcactgagacagacacag
tctcccatgttcaaggagtatatctcccaggtactaatgaacgccaagtctatggctgca
gctcttctcagcaaaggctacaccctggtatcagacgggaccgacaaccacctggtcctg
gttgatctgcggcctaaaggcattgacggggctcgggccgagagggtgctggagcttgtg
tcaatcaccgccaataagaacacctgccccggggacaagagcgccctgactcctggtggc
ctccggctcggtgctccagccctgacatccagacagttcaaagaagctgactttgtgcag
gttgtcgagctcatggatgaaggcttcaagattgccttggacgtcaagaaaaagaccgga
aagctccaagacttcaaaaacttcctccttcaggacccagagaccgttgctcgcatcgcc
aacctgcggcatcgcgttgaagcttttgccaggccctttcccatgccaggcttccacgac
cattaa
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