Cyclopterus lumpus (lumpfish): 117730647
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Entry
117730647 CDS
T09199
Symbol
trim62.1
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM62 isoform X1
KO
K12030
tripartite motif-containing protein 62 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117730647 (trim62.1)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117730647 (trim62.1)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117730647 (trim62.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-B_box
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_6
zf-RING_2
zf-RING_5
CorA
KxDL
zf-RING_10
Phasin
AIPR_N
U-box
DUF1359
AAA_13
Spc24
zf-Nse
Snapin_Pallidin
Exonuc_VII_L
SHE3
DUF4795
PilJ
Motif
Other DBs
NCBI-GeneID:
117730647
NCBI-ProteinID:
XP_034388386
Ensembl:
ENSCLMG00005000709
LinkDB
All DBs
Position
5:complement(17106248..17134688)
Genome browser
AA seq
510 aa
AA seq
DB search
MACCLKDELLCSICLSIYQDPVSFGCEHYFCRNCITEHWSRRELHGARDCPECRRTFTDP
LLSPSLKLSNIVERYSAFPLDAILNAQRSSYPCKDHEKVKLFCLTDKSLVCFFCDEPALH
EQHQVTTIDEAYEEIQREMKEQLATLQDSEKGHTEALQLLQRQLTETKSSAKSLRATIGD
AFERLHRFLRERQKSMLEELEMDTARKLADIEHKIQRYSQQLRDVKEGIQILQERLNETG
RHDFLEGIAVTSERCFTCSEFAKAVPVSSLQSDKKRNVVVNTFASRRIRIKGKIHETNLT
YEDFPTSKYMGPLQYSIWKSLFQDISPVPAALTLDPITAHQRLILSDDCTIVAYGNLHPQ
PLQDSPRRFDVEVSVLGAEGFVSGVHYWEVMVSEKTQWMIGVAHETVSRKGSIQIQPSRG
FYCIVMHDGNQYSACTEPWTRLNVKSKLEKVGVYLDYHKGLLIFYNADDMSWLYTYREKF
PAKVFPYFSPGQSHANGKNVQPLRINTVRL
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctgcttgaaggacgagctcctctgttccatctgcctcagcatctaccaggac
cccgtcagctttggctgcgagcactacttttgcagaaattgcatcaccgagcactggagc
agacgggagcttcacggagcgcgtgactgtcctgagtgccggaggaccttcaccgatccc
ctcctctcgccgagtctcaagttgtccaacattgtggagcgctactcagccttcccgctg
gacgccatcctcaacgcgcagaggagctcctacccctgcaaggaccacgagaaggtcaaa
ctcttctgcctcaccgacaaaagtctggtgtgcttcttctgcgacgagccggcgctacat
gagcagcaccaagtaacaactatcgacgaggcttacgaggagatacagagggagatgaag
gagcagctggccaccctgcaagacagtgagaagggacacactgaggccctgcagctcctg
caaagacaacttactgagaccaagtcctcagccaagagtctgcgcgcaaccatcggtgac
gcatttgaacgtcttcaccgcttcctgcgcgagcgccaaaagagcatgctggaggagctg
gagatggacacggcccgcaagctggccgacatcgagcacaagatccagcgctacagccag
cagctgcgcgacgtcaaggagggcatccagatcctgcaggagcgcctcaacgagacgggc
aggcacgacttcctggagggaatagccgtcacatctgagaggtgcttcacctgctctgag
tttgctaaagcagtcccagtatcttcactgcagtccgataagaaaagaaatgtggttgta
aacacatttgcttcaagaaggatcaggattaaagggaagatacatgagaccaatctgacg
tatgaagacttcccgacttccaagtacatggggcccttacagtactctatatggaagtct
ctcttccaggatatctcaccagtgccagcagcgttgaccctcgaccccatcacagctcat
caaagactgatcctctcagacgactgtaccatagtggcttacgggaatctccatccacaa
cccctgcaggactccccgcgccgctttgacgtggaggtttctgttctgggcgctgaaggc
ttcgtgtcaggcgtccattattgggaggtgatggtgtcggagaagacccagtggatgatc
ggcgtggcccacgagacagtcagccgcaagggcagcatccagatccagcccagccgcggg
ttctactgtatcgttatgcacgacggcaaccagtatagcgcctgcactgagccgtggact
cgcctcaatgtaaagagtaagctggagaaagtgggggtgtacctagactaccacaaaggc
ctgctcatcttctacaatgcagacgacatgtcctggctctatacctaccgggagaaattc
cccgccaaagtcttcccctacttcagcccgggccagagccacgccaacggcaagaacgtg
cagccgctgcgaatcaacactgtgcgcctttaa
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