Cyclopterus lumpus (lumpfish): 117730957
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Entry
117730957 CDS
T09199
Name
(RefSeq) probable nuclear hormone receptor HR38
KO
K04465
nuclear receptor subfamily 4 group A member 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117730957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117730957
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
clum03310
]
117730957
Transcription factors [BR:
clum03000
]
Eukaryotic type
Zinc finger
Cys4 nerve growth factor IB-like
117730957
Nuclear receptors [BR:
clum03310
]
4. Nerve growth factor IB like
4A. Nerve growth factor IB like receptor
117730957
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
117730957
NCBI-ProteinID:
XP_034388931
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Position
5:complement(11893629..11899156)
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AA seq
592 aa
AA seq
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MPCVQTQYASLLHDNYFSSEFLNPDLSAKLVMDISGQNDQLSTSSLPSINTLVGNGYVGE
FDAYSCKITTSPPTSTVSFSHAAVAESSCPQMQSQPFKLDDLQVYGCYPGSFALSCLDET
LSSCGSDYYGSPVYATASPPTSGFQAQSAPVWDSPFSPYPSAPPSSMADKCAMAQQLSFF
TFGSPGPEQHSPLGQHQDAQPGHDEHFFLPTQQHVSPHHCPPMSLEHGPLESPRIVEEAM
TSPKTHNSGSSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKDCPVD
KRRRNRCQFCRFQKCLVVGMVKEVVRTDGLKGRRGRLPSKPKAVAEASSTTPSVNIVASL
VRAHLDSNPTIGKLDYSKYQETVVNLKEKEEAGDIQQFYDLLTGALDVIRNWAETIPGFT
DFCTEDQELLLESAFVELFILRLAYRSNPEKDKLIFCNGLVLHRLQCVRSFGDWIDSIMD
FSQSLHRMNLDVSLFACLAALVIITDRHGLKEPKRVEDFQTHLITCLREHMSGNGSEASW
TQPNYLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIVEKIFMDTLPF
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgccctgtgtacaaacacagtatgcatccctgctgcatgacaactacttcagctctgag
ttcttaaaccctgacctcagtgccaaactggtgatggacatcagtggccaaaatgaccag
ctgtctacatcttcgttgcccagcatcaataccttggtgggaaatggctatgtcggggag
tttgatgcttattcctgcaagattaccacctcccctcccacctctacagtttcattcagc
cacgctgcggtagctgaaagctcctgccctcagatgcaaagccaacctttcaagctggat
gatcttcaggtgtatggctgttacccaggctcctttgcgctgagctgccttgatgaaaca
ctatcgtcatgtggctctgactactatggcagcccagtttatgccactgcttcccctcca
acatcaggctttcaggcccagtctgcacctgtgtgggattcccctttcagcccctacccc
tcagcccccccatcctctatggcagataagtgtgccatggcccagcagctctcctttttc
acctttggcagccccggaccagagcagcattctcccctagggcagcatcaggacgctcag
ccaggacatgatgaacatttcttcctgcctactcagcagcatgtctctccacatcattgt
ccacccatgtccctggagcatggacccctcgaaagccccaggatagtggaggaggccatg
acgtctcctaaaacccacaactcaggatccagtgagggccgctgtgcagtttgtggtgac
aatgcatcctgtcagcactatggagtccgcacctgtgagggctgcaaaggtttcttcaag
cgaactgtacagaaaaatgcaaaatatgtgtgcctcgccaataaagactgtcctgtggac
aagaggaggagaaaccgctgccagttttgtcgtttccagaaatgtcttgttgtgggaatg
gtaaaagaagttgttcgcacagacggcctaaaaggtcgccggggtcgtctcccctccaaa
cccaaggctgtggccgaggcttcatccacaacccccagtgtcaacattgtagcctctctt
gtcagggctcatctagactcaaacccaaccattggaaagctcgactactccaagtaccag
gagaccgtggtcaacctgaaagaaaaggaggaagccggtgatatccagcagttttatgac
ttgctgacaggtgctttggatgtaataagaaactgggctgaaaccatcccaggatttaca
gatttctgcacagaggaccaggagctgctccttgaatcagcttttgttgaactcttcatt
ctgcgactagcatacaggtcaaatccagagaaggacaagctgatcttctgtaacggtttg
gtcctccaccgactgcagtgtgttcgcagttttggtgactggattgactccattatggat
ttctcccagagccttcaccgcatgaacttagatgtctccttgtttgcctgtcttgcagcg
ttagttattatcactgatcgccatggcctcaaagagcccaaacgggtcgaggactttcag
actcatctcatcacatgtttaagggaacatatgagcggaaacggctcagaagcgagttgg
acccagcccaactatctttctcgtcttcttggcaaactccccgaactgaggactctgtgc
acacagggcctacagcgcatcttctacctgaaactagaggacctggtccctcctccacca
atagtggaaaaaatcttcatggatactctgccattctga
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