Cyclopterus lumpus (lumpfish): 117731008
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Entry
117731008 CDS
T09199
Symbol
rfx1b
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II regulatory factor RFX1
KO
K09173
regulatory factor X 1/2/3
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117731008 (rfx1b)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Other basic domains
RF-X
117731008 (rfx1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
Motif
Other DBs
NCBI-GeneID:
117731008
NCBI-ProteinID:
XP_034389013
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All DBs
Position
1:10376391..10386933
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AA seq
841 aa
AA seq
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MATSGYSEDLQPQQANTVTIATPPATTTSSAKTAHFLSEIPPTSGTIMSANQSSAASKTG
QGALCSQAPPISQSQKAAVLTAPTQHYVNPEIQHSAAQKSNGQSNSPQYIIVTVTEGSVH
SNDSLSDSSPPAPTQVVQPVESIQQRSVLQVVSQAAKRIQSGHVNNLHSVHIRQEVENVY
SGQVQYVDGGGDVTFTTSSIRSSNYPFSDSPLYSQTPPTSSSSYYETTPSTESDITGSVT
SQPVSVATAGANCGGAAAGGGGYVIQGGYMLGGGAAGGGGGQSFSNPNSRAPPATVQWLC
DNYEGAEGVSLPRCTLYYHYLLHCQEQKLEPLMLHPLANFIRSVFMGLRTRRLGTRGNSK
YHYYGLRIKSGSPLLRLMDEQQHMAMRQQPFTLSNRIKPLHKAQGXTNGTSGGXGQQQAA
ALCDISAQVQQYQQFLEPSRALPDFVDIDLQDRTLPDGILLEHIKAFQTLYREHCEAILD
VMVNLQFTLVETLWKSFWRFSQSSDTESLHLHNESEKRLPKSCLVVLCKYEPVLRWTKEC
DNLLYQTLVEILIPDVLRPIPSALTQAIRNFAKSLENWLTGAMMNIPDEMVRIKGIYRLL
HXFVVCVGSFSQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFTNVQEQASWVC
QCEDRVVQQLEQDFKMTLQQQNSXEQWATWLDGVVTEALKPYEHNSVALPKAAKVFLLNW
SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGVTPIAVMGEFASTV
KNRISRDLEKEEEEDDEEEESEDEGGDLVLQSSSLSAMDDEKDPMEPPAKLPRTSFNLHT
D
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttctggatactctgaggaccttcagcctcagcaggccaacactgtaaccata
gcaacacctcctgccaccacaacctcatctgcaaagacggcacacttcctgtccgagatt
ccaccaacctctgggaccattatgtcggctaaccaatcgtccgctgcctcaaaaacagga
cagggtgcactttgttctcaagcaccgcccatcagccaaagccagaaggcagcggttctg
acagcgcccacacagcactacgtgaacccagaaatccagcattctgcggcccagaaaagt
aacggtcagagcaactctccccagtacatcatagtaactgtcacagagggctctgttcac
tccaatgacagcctgtccgactccagcccacctgctcctactcaggtggtccaacctgtg
gagtccatccaacagaggtcagtgttgcaagtggtgtcgcaggcagccaagaggattcag
tctggccacgtcaacaatctacactctgtgcacattaggcaggaggtggagaatgtgtac
tctggccaggtgcagtatgtggacggaggaggagacgtgacttttactacatcctccatt
cgatccagcaactaccctttctccgactcgcccctctactcccagacccctcccacctcc
tcctcctcctactacgagaccacgcccagtactgagtcagacatcaccggctctgtgacc
tcgcagccggtttctgtggcaacagcgggagccaattgtgggggagctgctgcaggcgga
gggggctatgtcattcagggaggttatatgttaggaggaggagcagcaggtggaggagga
ggacagtctttctccaaccctaactctcgtgcaccacccgctactgtgcagtggctgtgt
gataactatgagggggcagagggggtgagtttacctcgctgcaccctctactaccactac
ctgctgcactgccaggagcagaaactagaaccgttaatgctgcatcctttggcaaacttc
atcaggtctgtcttcatggggctacgtacacgaagattaggcaccagagggaactcaaag
taccactactatggtctcaggatcaaatctggttccccactgctcagactgatggatgaa
caacagcacatggcgatgaggcagcaaccttttactctgtccaataggataaagccactt
cataaggcacagggantcaccaatgggacatcaggtggantgggtcagcagcaggcggcg
gcactatgtgatatttcggcacaggtgcaacagtatcagcagtttcttgagccatcaagg
gcgctgccagactttgtggacattgatctgcaagatcgaaccctgcctgatgggatcctt
ttagaacacatcaaggccttccagactctctacagagagcactgtgaggccattctggat
gtgatggtcaaccttcagttcactctcgtggagacactgtggaaatccttctggaggttc
agccagagcagtgacacagaatcactccacctgcacaatgagtctgagaagcgtctgccc
aagtcgtgcctggtggtgctgtgtaagtatgagccagtgctgcgctggaccaaagagtgc
gacaacctgctgtaccagactctggtggagatcctcatccctgatgtactgagacccatc
cccagtgccttaactcaggccattcgcaactttgccaagagtctggagaattggttgacc
ggagccatgatgaacatcccagacgagatggttcgcattaaaggtatttataggcttctg
cattgattcgtggtgtgtgttggctccttctcccagacgttgcgccgctataccagcctg
aaccacctggcccaggcagcccgtgctgtcctgcagaacacagcccagatcaaccagatg
ctctccgacctcaaccgggttgatttcactaacgtacaggagcaggcatcctgggtatgt
cagtgtgaggaccgtgtggtacagcagctggagcaggactttaaaatgactctgcagcag
cagaactctnctgagcagtgggctacctggctggacggtgttgtcactgaggccctaaag
ccctacgagcacaactctgtcgccctaccaaaggctgccaaggtcttcttgctcaactgg
tccttttatagctctatggtaatccgagatctgactctgcgcagtgctgccagctttggt
tcctttcacctgatccgcttgctgtatgatgagtatatgtactacctgatagaacacagg
gtggcccaggctaaaggagtgacacccattgcggtcatgggagaatttgccagcactgtg
aagaaccgaatctctcgggacctggaaaaagaagaagaagaggatgatgaggaagaggag
agcgaagacgagggcggtgatctcgtgctgcagtccagctctctgagtgcaatggatgac
gagaaggacccgatggagccgcccgccaagttgcccaggacgagtttcaatctgcacact
gactga
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