KEGG   Cyclopterus lumpus (lumpfish): 117731241
Entry
117731241         CDS       T09199                                 
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a
  KO
K06757  neurofascin
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04514  Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:clum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    117731241 (nfasca)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:clum04515]
    117731241 (nfasca)
Cell adhesion molecules [BR:clum04515]
 Immunoglobulin superfamily
  L1 family
   117731241 (nfasca)
SSDB
Motif
Pfam: I-set Ig_3 ig Ig_2 fn3 Bravo_FIGEY V-set C2-set_2 Ig_DSCAM-DSCAML_C Ig_VEGFR-1-like_5th BiPBP_C Pur_ac_phosph_N DUF3792
Other DBs
NCBI-GeneID: 117731241
NCBI-ProteinID: XP_034389350
Ensembl: ENSCLMG00005005368
LinkDB
Position
5:complement(9280390..9362722)
AA seq 1172 aa
MLGRGGHVALALMSLVLLLWREAAPIEVPQDPKILQDLKQPPTIVKQSVKDYIVDPRDNI
IIECEAKGNPVPTFSWRRNGKFFNIGKDPRVTMRKRSGTLEIGFRSGGRPEDYEGEYQCF
ATNDLGVALSNKILLRVSKAPLWPKEVLEPVVVTEGTPLVLACNPPPGLPPPFTFWMNSA
MTPIPQDKRVSMGLNGDLYFSNVLIKDAHTDYCCNARFLFTHTIQQKNPFTLKVLTSRKV
AESTPTFLSPSGTESSKMVLRDEQLLLECIAAGLPTPTIKWFKKGGDLPGRKVKFDNYNK
TLKIINVSEEDAGEYVCMANNHLGSIRHSIFVQVKAAPYWLDKPSNLVLAPEENGRLVCR
ANGNPKPIIEWLINGQPIESTPHSPSRQVLGDTILFRSVQMGSSAVYQCNASNQHGYLLA
NAFVSVLDMLPRMLGPKNQLIKVIVNNRTFLDCPFFGSPLPDLRWFKNGQGSGLDGGHYR
VYINGTLEIKRARAEDEGTYTCVANSMLGKAENQVRLEVKEPTRIVRVPEHRSAVRGSLA
HFDCKVKSDPSLPITVAWSKDDKPLSLGWRLRKDGESLLITNVNEGDEGTYTCTVKSEID
QDSASARLTVLEEASLNPSSALPPDRPDAPVELDLSDPTARSVRLTWIPENDHRSPVTEF
LVQFEENRWEPGRWQNLSTYPGDLNSVILQLAPYANYQFRIIAINAVGQSQPSRPSPRYL
SNGAAPDAIPRGLRGWGSKKDNMEITWEPLLNLERNGPNLHYSVWWRRNDLGEGWSNVTT
VESKHVIHNTETYMPYEIKVQARNEFGQGPESNVVVGYSGEDKPTDAPTDLQVSKVDSTK
ANLHWKPVDLSSVQGEFKEYRLYYWRESSLVPGLVVSKEKKTKGFYSIVAEPSGILSDLV
PFSKYKMFLVVANNRFEGPPSNTVDITTKEGVPDAPKFFRINRRTFDTIHLEWDKPLEPN
GILIGYQLKYQTVNGSRVGRPQLETLPPNVTTFTLRMPDRSTRYKFYLSALTQVGSGEVY
AEESPHFANEAYIDQVDIATQGWFIGLMCAIALIILILLIVCFIKRSRGGKYPVRDKKDL
PLDPVDQKDQDGSFDYHSDEDNKPLQGSQTSLDGNVKESDDSLVDYGEGGDGQFNEDGSF
IGQYTVKKDKDETEGNESSEATSPVNAIYSLA
NT seq 3519 nt   +upstreamnt  +downstreamnt
atgttggggcgggggggccacgtggccctggctctcatgtcattagtgctattactgtgg
cgtgaagcagcacccattgaagtaccacaagacccaaagatcctgcaagacctgaagcag
ccccccaccatagtcaagcagtcagtgaaggactacattgtcgaccccagagataacatc
atcatcgagtgtgaggccaagggcaacccagtaccaacgttctcatggcgaagaaacggg
aagtttttcaacatcgggaaagatcccagggtgacaatgcgaaaacgctcgggaactctg
gagatcggtttccgtagtggaggacgaccagaggactatgaaggggagtaccagtgtttt
gccaccaatgacctcggagtggctctgtccaacaaaatcctgctcagggtctccaaggct
cctctgtggcctaaagaggtgctggagccggtagtggtgactgaaggcaccccgctggtg
ctagcctgcaaccccccaccaggcctgcctcctccgttcaccttttggatgaacagcgcg
atgactccgatccctcaggataagagggtgtccatgggcctgaacggagacctgtacttc
tccaacgtcttgatcaaagacgctcacaccgactactgctgcaatgctcgcttcctcttc
acacacaccattcaacagaagaaccccttcacactcaaagtcctgacgagccgcaaagta
gccgagtccacgccaaccttcctctctccctcggggaccgagagctccaagatggtgcta
cgggacgagcaactgctgctggagtgtatcgctgctggacttccgacacccaccatcaag
tggtttaagaagggtggggacctgccaggcagaaaggtgaagtttgacaactacaacaag
accctgaagatcatcaacgtgtcagaggaggatgctggggagtacgtttgcatggccaac
aaccatttaggcagcatacgccactccatctttgtccaggtcaaagcggctccttattgg
ctcgacaaaccctccaacctggtgctcgctccggaggagaacggccggctggtgtgtcgg
gccaacggcaaccccaaaccgatcatcgagtggctgatcaacggacagcctatagagagc
actccccacagccccagcagacaggtgcttggtgataccatcctcttccgctcggtgcag
atgggaagcagtgctgtctaccaatgcaacgcctccaaccagcacggctacctgctggcc
aacgccttcgtcagtgtcctcgacatgcttccgaggatgctgggccctaaaaaccagctg
atcaaagtcattgtgaacaaccgcaccttcctagactgtcctttcttcgggtctcctctg
ccggacctacgctggtttaagaacggacagggcagtgggctggacggaggtcattaccgc
gtttacatcaacggcaccctggagatcaaacgggcccgagcagaggacgagggcacctac
acctgtgtggccaacagcatgctgggcaaggcagagaaccaggtccgcctagaggtcaaa
gagccgactcgtattgttcgagtcccggagcaccggtcggccgtcaggggctccctggct
cacttcgactgtaaggtgaagtctgatcccagcctgcccatcaccgtggcctggtccaag
gatgacaagcctctctctctgggctggaggctgaggaaagatggggagtcgctgctcatc
accaatgtgaacgagggggacgagggaacctacacctgcactgttaaatctgagatagac
caggactcagcctcagcccgcctcacggtgttagaggaagcctccctcaacccctctagt
gccttgccgccagaccgcccagacgctccagtggaactagatctgtcagaccccacagcc
cgcagcgttcgcctcacctggatccccgaaaacgaccaccggagcccagtcacagaattc
ttggtccagttcgaggagaaccgctgggagccgggcaggtggcagaacctatccacatac
ccaggagacctcaactctgtcatcctgcagctcgccccctacgccaactaccagttcagg
atcatcgccatcaacgcagtgggccagagtcagcccagccggccctcgccacggtacctg
tccaacggagctgccccagatgccatccccagaggtctacgaggatggggatccaagaag
gacaatatggagatcacctgggagcctctgcttaatctggagaggaacgggccaaacctg
cactacagcgtgtggtggagacggaacgatttgggagaagggtggagtaacgtgaccacg
gtggagtccaaacatgtcatccacaacacagagacctacatgccttacgagatcaaagtc
caggccagaaatgagtttggacagggacctgagtctaatgtggttgttggatactctgga
gaagacaagcccaccgacgctcccactgacctgcaggtgtcaaaggttgacagcaccaag
gccaacttacactggaagcccgtggacctgagctctgtgcagggagagttcaaggagtac
aggttgtactactggcgagagtccagtctggttccgggtctggtggtcagtaaggagaag
aagaccaaaggtttctacagcatcgtggctgagccgtccggcatcctcagcgacctggtg
cccttctcaaaatacaagatgttcctggttgtggccaacaaccgctttgagggtccaccc
agcaacacggtggacatcaccaccaaggagggagtgccagatgcaccaaagtttttcagg
attaaccggagaacttttgacaccatccaccttgaatgggacaaacctctggagcccaac
ggcattctgattggataccagctcaagtaccaaacagtcaatggctccagagtgggtcgt
ccccagttggagactctccctcctaacgtgacaacgtttacccttcgcatgccggaccga
tccacccgctacaagttctacctgtcagcgctcacccaggtgggatcaggggaggtctat
gctgaggagtcccctcacttcgccaatgaagcctacatagaccaggtagacatagccact
caaggctggttcattggcctgatgtgtgccatcgccctcatcatactgatccttctcatc
gtctgcttcatcaagaggagccgcgggggaaaatacccagtccgtgacaaaaaagatctc
cccttggacccagtagatcagaaagaccaggacggatccttcgattaccacagcgacgag
gacaacaagcccctccagggcagccagacgtcgctggacggtaatgtgaaggaaagtgac
gacagtctggtggactacggcgaaggtggtgatggccagttcaacgaggacggctctttc
atcggccagtacactgtgaagaaggacaaggatgagacggagggcaacgagagctctgag
gccacctcacccgtcaacgccatctactcgctggcatag

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