Cyclopterus lumpus (lumpfish): 117731320
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Entry
117731320 CDS
T09199
Symbol
shq1
Name
(RefSeq) protein SHQ1 homolog isoform X1
KO
K14764
protein SHQ1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
clum03009
]
117731320 (shq1)
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
Sno RNPs
Box H/ACA snoRNPs
117731320 (shq1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHQ1
SHQ1-like_CS
HGTP_anticodon2
Motif
Other DBs
NCBI-GeneID:
117731320
NCBI-ProteinID:
XP_034389480
Ensembl:
ENSCLMG00005020519
UniProt:
A0A8C3AQF7
LinkDB
All DBs
Position
5:4842588..4869219
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AA seq
606 aa
AA seq
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MITPAFDLSQDPEFLILSIRVPYTRTSEFDLHVDGADFKFFAKPYFLRLSLPGRIVEDGR
ETAKFDIDEGLVTLRVPKETAGEHFEGLQMLTSLLAPKGSRSARPLIEDLSTGSGEGAMG
GDDEEEDDEEDFDWQVEQEVYKESSEEELGALQKYGFGNQRCGVFARLQEELSDVTDVKN
PEGTTAAERRQGRLDAEAAAFSPDHYLADLFEDDEIKGLLKFSPWWEKLSPLTEQEGEAE
VSFTDDEKEQLRKFANRSYLLDKTSRQQTWLSLVDVLLAYCYEARSTEGEHNVESPWTIS
KLSGTLCWLETYSSLQDVLASFGRRVLCYPLYRHFAMASAAVRDTTKILQSGKACVLRCL
LDIHRVFRENEPAYILNDLYITDYCVWIQRVKSKKMSALAVTLQKASLRKKDLELDLEEL
EEAATMVAGEEEEEEEEGEAPTSHSDDSEASSGSSGDSSDESEKSEAEGQSCTASNEGGG
GGTGTCKDNPLQPRTISAASPIPREPASALLSAESAADALPSASRDSCLLIQELGERVAE
ELTISPNSGCGQAESAHSRADGAAATFGGSGGGTLLEPSPRRNPLLIVPDAMSLPRDGCC
GTLHEF
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgataactccggcgtttgacctgagccaagatccagagttcctgatcctcagcatccgc
gtgccctacaccagaacctctgagttcgaccttcacgtcgatggagccgatttcaagttc
tttgccaagccctactttctcagattgtctcttcctggaagaatagtggaggatgggaga
gaaacggccaagtttgacattgatgaaggtctcgtcactcttcgggtcccgaaggaaaca
gctggagagcactttgagggtctccagatgctcacgagtctcctcgccccaaaaggctcc
cgttcagcgagaccactgattgaggacttgagcacgggaagcggtgaaggcgcgatgggc
ggtgacgacgaagaagaagatgatgaggaggactttgactggcaggttgagcaggaggtg
tacaaggagagctccgaggaggagctgggagccctgcagaaatatggctttggcaatcag
aggtgtggagtgtttgcaagattacaggaagagctgagcgacgtgacggatgtcaagaac
ccagagggaacaacggcagcagagaggaggcagggacgtctcgacgcagaagcggctgct
ttttctcctgaccattacctagctgacttgtttgaggacgatgagatcaaggggctgctg
aagtttagcccatggtgggaaaagctgagtcctttgacagagcaggagggggaagctgaa
gtatcgttcaccgacgacgagaaggagcagctgagaaaatttgccaaccgctcgtacctg
ctggacaagacgtcccggcagcaaacgtggctcagcctggtggacgtcctgctggcttac
tgctacgaagcccgctctacggagggagagcacaacgttgagtccccgtggactatcagt
aaactcagcgggactctctgctggctggagacgtacagctccttgcaagacgtcctggcg
tcattcggacggagggttttgtgctacccactctacagacactttgcaatggcatccgcg
gctgttcgggacacaacgaagattttgcagtcagggaaagcctgtgtcctcagatgcctg
ctggacattcaccgagtgtttcgagagaacgagccggcctacatactgaacgatctgtac
atcacagactactgcgtctggatccagagggtcaagtccaagaagatgtcagccttggcc
gtgacgttacaaaaagcctccctgcggaaaaaagacttggagctggatctcgaggagcta
gaggaggcagcgacaatggtggctggggaggaggaggaggaggaggaggagggagaagct
ccgacatcccacagtgacgacagcgaagcttccagcggcagcagcggtgactcgtccgac
gagagcgagaaatctgaggctgaagggcaaagctgcaccgcatccaacgagggaggggga
ggggggacagggacgtgtaaggacaaccctctacagccccgaaccatctcggctgcctct
cccatcccccgggagcccgcgagcgcactcctctcagcggagagcgcggcggacgccctc
ccctccgcctcgcgggactcctgcctactgatccaggagctgggggaacgggtggcggag
gagctgactatctccccgaactccggctgcggccaagcggagagcgcgcattcccgggcg
gacggtgccgcggcaacatttggggggagcggcggcgggactttgctggagccgagccct
cgcaggaaccccctgctcatcgtcccggacgcgatgagtctgccgagagacggatgttgt
ggaaccctccatgaattttga
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