Cyclopterus lumpus (lumpfish): 117731402
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Entry
117731402 CDS
T09199
Symbol
rae1
Name
(RefSeq) LOW QUALITY PROTEIN: mRNA export factor
KO
K14298
mRNA export factor
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117731402 (rae1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117731402 (rae1)
03036 Chromosome and associated proteins [BR:
clum03036
]
117731402 (rae1)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117731402 (rae1)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117731402 (rae1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_EML_2
WDR55
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_IFT140_1st
eIF2A
Beta-prop_EIPR1
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Exonuc_X-T_C
Motif
Other DBs
NCBI-GeneID:
117731402
NCBI-ProteinID:
XP_034389637
Ensembl:
ENSCLMG00005018580
LinkDB
All DBs
Position
5:3879623..3883102
Genome browser
AA seq
369 aa
AA seq
DB search
MSLFGATSGFGSSGDRCLGNATTDSHNPLQDVEVTSPPDDSISCLAFSPPSMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQA
MQIAQHEGPIKAIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNSNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgagtttatttggggcaacctccgggttcggaagcagcggggaccggtgtcttggaaac
gcaacaacagacagccacaatcccctccaggatgttgaagtgacttcccctccagatgac
agcattagctgtctggctttcagccccccctccatgccggggaacttcctcatcggagga
tcctgggccaacgatgtccggtgctgggaggttcaggacaatgggcagacggtccccaaa
gcccaacagatgcacacaggtccggtgctggatgtatgctggagtgacgatgggagtaaa
gtcttcactgcttcctgtgacaaaacggccaagatgtgggatcttaacagcaatcaagct
atgcagattgcacagcatgaaggtccgatcaaggcaatccactggatcaaagccccgaac
tacagctgcatcatgacgggcagttgggacaaaacactgaagttctgggacacccggtct
cccaatcccatgatgtctctgcagatgccagagagatgctactgtgcagatgttgtgtac
cccatggctgtggtcgccacggcggagagaggcctgatagtgtaccagctggagaaccag
ccctctgagtttcgcagaatagactctcctctcaaacatcagcatcgatgtgtcgccata
ttcaaggacaagcagaacaagcccactggctttgcactgggaagcattgagggccgagtc
gccatccactacatcaaccctccaaacccagccaaagacaacttcaccttcaagtgtcac
aggtcgaatggaaccaacaccgccacgccacaggacatctatgctgtaaacgccatctct
ttccatccggttcacggcacactggcgaccgtgggctcagacggacgcttcagcttttgg
gacaaagacgcccgcaccaagttgaagacctccgagcagctcgaccagcccattacagct
tgctgcttcaacagcaacggcaacatctttgcatacgcctccagttacgattggtcaaag
ggccacgagtactacaacccccagaaaaagaactacatcttcttgaggaacgctgccgag
gagctgaagcctcggaacaagaaatggtga
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integrated database retrieval system
