Cyclopterus lumpus (lumpfish): 117731439
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Entry
117731439 CDS
T09199
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04510
Focal adhesion
clum04512
ECM-receptor interaction
clum04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117731439 (col2a1b)
04518 Integrin signaling
117731439 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117731439 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
clum00536
]
117731439 (col2a1b)
Glycosaminoglycan binding proteins [BR:
clum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117731439 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
117731439
NCBI-ProteinID:
XP_034389696
LinkDB
All DBs
Position
5
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEDDQEDVSRCLQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIVCEELKDCPKPEIPFGECCPVCAADHAPPIGAPGGKGQKGEPGDITDVVG
PRGPGGPMGPPGEQGPRGSRGDKGETGSLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG
PMGPRGPTGPSGKPGDDGEAGKSGKSGDRGPAGPQGARGFPGTPGLPGIKGHRGYLGLDG
SKGETGALGSKGESGAPGDNGANGPMGPRGLPGERGRPGPSGVAGARGNDGLSGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGDSGTPGSSGPSGASGNPGTDGIPG
SKGSSGSPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGESGPKGEFGPVG
LQGSIGPQGEEGKRGPRGEAGSAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPSG
ASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARG
QPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPSGPGGPSGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGSQGLQG
PRGLPGTPGTDGPKGAIGPAGGGGAQGPPGLQGMPGERGGAGIPGPKGDRGDLGEKGPEG
APGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFAG
PPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGPAGASGEKG
DAGEDGPSGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGPPGLTGPSGELGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGASGAPGASG
PVGPTGKQGDRGESGAQGPSGPSGPAGARGMPGPQGPRGDKGEGGESGERGQKGHRGFTG
LQGLPGPPGQAGDQGATGPSGPSGQRGPPGPVGPSGKDGGNGLPGPIGPPGPRGRGGETG
PSGPSGNPGPPGLPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVDA
TLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTIDAIKVFCNM
ETGESCVKSKPASIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAVNTAAIQMTF
LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHTGQWGKTVMEYRSQKTSRLPIVDIAPMDIGGTDQEFGVEVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattcgaggactgtactgctacttgtagcaacccaagtgtgtcta
ttagccgttgtaagatgtcaagaggacgaccaggaggatgttagtcgctgtttacaagat
ggacagcgctatagcgacaaggacgtgtggaaaccagagccttgtcgcatctgcgtgtgt
gacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgccccaaa
cctgaaatcccatttggagagtgttgccctgtctgcgcagctgaccacgctccacccatt
ggagcacctggaggcaagggtcagaaaggtgaacccggagacattaccgatgttgtggga
ccaagaggaccaggtggcccaatgggcccaccaggagagcaaggaccccgtggatcgaga
ggagacaagggagagacgggaagccttggtcctcgtggcagagatggtgagcctggcacc
cccggaaaccccggcccccccggacctccaggacctaatggaccccctggccttggtgga
aactttgctgctcagatggctggtggttttgacgagaaatctggcggcgcacagatgggt
gtgatgcaaggaccaatgggcccgatgggtcccagaggaccacctggccccagcggatca
cctggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacagtccggc
cccatgggtccccgtggccccaccggaccttctggaaaacctggagatgatggtgaggct
ggcaagtctggcaaatcaggtgaccgtggacctgctggacctcagggagctcgtggattc
ccaggaactcctggcctgcccggcatcaagggacacagaggttatctaggtcttgatggt
tcaaagggagagactggagctcttgggtccaagggagagtccggtgctcccggagataat
ggcgctaatggaccgatgggacctcgtggtttgcctggtgagagaggtcgtcctggaccc
agtggagttgctggagcacgtggaaatgatggcttgtcgggtcctgctggacccccaggc
cccgtcggcccctctggagctccaggcttccctggctctcctggttcaaagggagaagct
ggtcctactggtgctcgtggtcctgagggtgctcagggaccccgtggagactctggaaca
cccggatcatccggaccttctggagcttctggaaatcctggtactgatggaatccctgga
tccaaaggatcttctggttctcctggtattgctggtgctcctggtttccctggacctcgt
ggacctcccgggcctcagggagcaactggaccactcgggcccaaaggaacatctggagac
ccaggtatcccaggcttcaagggagagtctggacccaaaggagaatttggaccggttggt
ctgcagggatctattggcccacaaggagaagaaggcaagagaggacccaggggtgaggct
ggttctgctggaccacttggacctcctggagagagaggatcccccggtaaccgtggtttc
cctggtcaagacggtctggctggtcccaagggagcccctggtgagcgtggaccctctggt
gctagtggtcccaagggtgccaacggtgaccccggccgtccaggagagtctggtctgccc
ggtgccagaggcctgactggacgcccaggtgacgctggtcctcaaggcaaagttggacct
tctggcgcttctggtgaggacggtcgtccaggaccccccggcccacaaggagcccgtgga
cagccgggtgtcatgggattccccggacccaagggagcaactggtgaacctggcaagtct
ggagagaaaggactgggtggagctcctggtctgagaggtctgcctggcaaagatggagaa
accggcccttctggacccggcggcccttctggacctgctggagagagaggagaacaagga
cagcctggtccctcaggtttccagggtctgcctggacctcctggcccacctggtgaggga
ggaaagcctggagaccagggtgttcctggagagggtggtgctgctggtgctactggaccc
agaggtgagcgtggtttccccggagagagaggagctgccggctctcagggtctgcaggga
cctcgaggtctgcctggaactcctggaactgacggacccaagggagccattggacctgct
ggtggtggtggagctcagggaccccctggcctgcagggtatgcccggagagagaggaggt
gctggcattcctggacccaaaggagacagaggtgacctcggagagaaaggacctgaaggt
gctcctggcaaagatggtggcagaggtctcactggtcccattggtcctcctggtcccggt
ggtcccaacggcgagaagggtgaatctggtcctgctggtccttctggagctcctggtacc
cgcggtgctcctggggacaggggggagactggacctcctgggcctgctggatttgctgga
cctcctggttctgacggtcagccaggaatcaaaggagagcagggagaatctggacagaag
ggtgatgctggggcccctggaccccaaggaccatctggtgcccctggacctgcaggtcct
accggtgtttttggacctaaaggtgctcgtggtgctcagggacctcccggtgctactggt
ttccctggagctgctggccgagttggaccccctggtcccaatggaaatcctggacctgct
ggtcctgccggcccctctggtaaagatggacccaagggtgtgaggggagatggtggaccc
ccaggccgacagggtgacgctgggctccgtggtccagctggggcttctggagagaaggga
gatgctggagaggatggtccctctggacccctcggtccttcaggtcctcagggtttggct
ggtcagcgcggtatcgtcggtttgcccggacagcgtggtgagagaggcttccctggtctg
cctggaccttctggtgagcccggaaagcagggagctcctggtggcagtggagaccgcgga
ccccctgggcctgttgggccacctggactcactggaccttcaggagagcttggtagagag
ggcaacgctggatctgatggacctcctggtagagatggtgctactggaatcaagggtgat
cgtggtaacactggtcctgctggtgctcctggtgcttcaggcgctcctggtgcttccggc
ccagttggtcctaccggcaaacagggagacagaggagagtctggtgcacaaggaccttct
ggaccttcaggacctgctggagccagaggaatgcctggaccacaaggaccccgcggtgac
aagggagagggtggagagtctggcgagagagggcagaagggacacagaggcttcactggt
ctgcagggtctgcccggacctccgggtcaagctggagaccagggtgctactggaccctct
ggaccttctggacaaagaggaccacctggacctgttggccctagtggaaaggatggtgga
aacggtctgccaggacccattggaccacccggacctcgtggtcgcggtggagagaccggt
ccctctggtccctctggaaaccctggaccccccggtctccctggtccccctggccctggc
attgacatgtccgcctttgctggtctgggtcagactgaaaagtcccctgatcctctcagg
tacatgagggccgaccaggcttcaggaaacctccgtcagcacgatgctgaggtcgacgcc
acgctcaaatctctcaacaaccagatagagaacatccgcagcccggagggatccaggaag
aacccggctcgcacctgcagagacctcaagctctgccatcctgactggaagagcggagac
tactggattgatcccaatcagggctgcaccatcgatgcaattaaggtcttctgcaacatg
gagacaggagagtcctgcgtcaaatccaagcctgccagtatccctcgcaagaactggtgg
tccagcaagagcaaggaccgcaaacatgtctggttcggagagacaatgaatggaggcttc
cacttcagctatggtgatgacagcctggcagtcaacactgctgccattcagatgactttc
ctgagactgctgtccaccgaggcttctcaaaacctcacttaccactgtaagaacagcgtg
gcctacatggacgcctcaacgggcaacctgaagaaggccgttctgctgcagggctccaac
gacgtggagatcagagccgagggcaacagccgctttacttacagcgtgatggaggacggc
tgcacgaaacacacgggacagtggggcaagacagtgatggaatacagatcgcagaagacc
tctcgtctgcccattgtagacattgcccccatggatattggaggaacagaccaggagttc
ggagtcgaagtcggggcagtctgcttcttgtaa
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integrated database retrieval system
