KEGG   Cyclopterus lumpus (lumpfish): 117731525
Entry
117731525         CDS       T09199                                 
Symbol
wdr82
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    117731525 (wdr82)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clum03019]
    117731525 (wdr82)
   03036 Chromosome and associated proteins [BR:clum03036]
    117731525 (wdr82)
Messenger RNA biogenesis [BR:clum03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     117731525 (wdr82)
Chromosome and associated proteins [BR:clum03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     117731525 (wdr82)
    COMPASS/SET1 complex (yeast)
     117731525 (wdr82)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd ANAPC4_WD40 WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N WD40_MABP1-WDR62_2nd DSE1_N Beta-prop_TEP1_C Beta-prop_EML Beta-prop_VPS8 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_WDR75_1st Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 WD40_RFWD3 Beta-prop_ACSF4 PAC11 Beta-prop_EIPR1 WD_LRWD1 Tricorn_2nd MinC_C TRM82_WD
Other DBs
NCBI-GeneID: 117731525
NCBI-ProteinID: XP_034389832
Ensembl: ENSCLMG00005000222
UniProt: A0A8C2W9Y5
LinkDB
Position
5
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSSNGESIISSSDDDSLVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVTSLSMSPVDD
TFISGSSDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSFD
KGPFATFKLQYDRTCEWTGLKFSNDGKLILLSTNGGALRVLDAFKGAVLHSFGGYNNSKC
VTLEASFTPDSQFVMIGSEDGKIHVWNAESGMKVALLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctgacggacaatgtgctgcggagcttcagagttgctaaggtgttccgggaaaac
tcagacaaaattaactgttttgatttcagttcaaacggagaatctattatttccagcagc
gacgacgactccttagtcttgtacgactgccaagagggaaaacctaagaggactctctat
agcaaaaagtacggagtggatctgatcaggtacacacatgctgcaaacactgtggtctac
agttccaacaaaatcgatgatactatccgatacctttctcttcatgacaacaaatacatc
cgctactttcctgggcataacaaaagagtcacatctctctccatgtctcctgtggacgac
acatttatttctggctcgtcggataaaacaatcagattgtgggatttgcggtcacctaac
tgccagggtttgatgcacctgcaggggaagccagtgtgctcctttgatccagaaggttta
atttttgctgcaggaataaattcagagatggttaaactttatgatctgcggtcgtttgac
aagggtccctttgcaaccttcaagcttcagtacgaccggacgtgcgagtggacaggactc
aagtttagcaatgacggaaaactcattcttctttcgacaaatggtggagcccttcgtgtc
ttagatgcttttaagggtgctgtgctacattcctttgggggctacaataacagtaaatgt
gtaacactggaggcgtcattcactccggattcacagtttgttatgatcggctctgaggac
ggaaagatccacgtgtggaatgcagagagcggcatgaaggtggctttattagacggaaag
cacacaggaccaataacctgcttgcagttcaaccccaagttcatgacgtttgcaagtgcc
tgctccaacatggcattttggctcccgaccatcgatgactga

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