Cyclopterus lumpus (lumpfish): 117731777 Help Entry 117731777         CDS       T09199                                  Symbol spg11 Name (RefSeq) spatacsin isoform X1   KO K19026   spatacsin Organism clum  Cyclopterus lumpus (lumpfish) Brite KEGG Orthology (KO) [BR:clum00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:clum03400]     117731777 (spg11) DNA repair and recombination proteins [BR:clum03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      117731777 (spg11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  117731777 NCBI-ProteinID:  XP_034390032 Ensembl:  ENSCLMG00005006174 LinkDB All DBs Position 6:1366131..1404144 Genome browser AA seq 2436 aa AA seqDB search MLEAAQRPESSSIEVCVIPENRHCGGVTDIWRAELAPGGSLLGCLGVRGRLVVWNPADRE APPAEVDGCYADFSWEEEQGGGASSSSSLLAVGAQGDVTLLQVEAEPSSSITVLRVSGCP AGRLLQTVRQQDPDVCELQSVCVLSFAAGRSCVLLNRDWLLQLQWRQAEEEPQTKEEPQT KEEPQTASCCNIRLTDDGGRYAVHHCVCRDFLFVLSAAGLISVYHVTDGSLLASIDLPAY LTSLQAEDDLVSSSFSSCFSSSSSSFCLLQVSTDLSTAVAVTQSHAAVAVDLDRYFRLYP DHLLCAAAPQRPPIRPQTPTDQDGLPSSVCSLAALGAPFSADRSWEARLASMYSRAQKSA APSSSWSSSWSSSWSSSWSWSSSLNPPRPHRASSSAHSRVPCGGATAAFSAPERSAPSLL TVSEFSAQLTFASPGNRRTTVALWDFESGRVSHHEAEGEAAPVQHCRERQHRLLLKESGV FQVLFSVSQQDLLSRLMLFGSAATVDAVCHLNSWGRCSIPVHALQAGLKNRQLDTVDFYL KSKENLLVPDADQPAASTRSLSARFQELCPALDLLCSAVRDSNSEAQSRQFSEQLLNVTM TFVNTQIRSVLSNTQLEDEGVRDCVDALDRYVTELRSYMKKFPWTAGGDATDSADRTQEE EKEGEEEEKRDEWEQLPTEEVVCQSVLTNQILRAQAVLRRRSRPEQRLSALRMEGLRQVF CCLQHRDLQTANALLINMGFSVKKQLHSVCLYTDDKDLREFVVEELSGRSHFPEEEVQSV AFIGQMERLGSLPAARRHADATPHRPVQVQMVRRWGGGGDDLLEELVGQRRSAVEEEEQK AGLWRNLRLDWVRNWDPSCQTAVLLSRLHHTEVTSCDPAVLWRYLTALHDQRRVVDWIQN QQTPGGSRWPELTPELVDDNTACSAYMREEILDLLARRGLFVPEELADLEQLLWRLAQGG GVMALPPPVPRYRSPLGLDLHGLFISFCVDRGFQYLLYTYLEHHRLTPRNCPLLTNQSLS ESQPWFEMLVKIQEITRDLSDPGLVFQASLTSAQVLLPGSQASLSSLLLEGHSLLALAAI MFAPGGINQVVVQGERSGRSERTVDPQLLKMALAPHPKLRAALFPSGPRGTGSSSDVSVY HLLQSLHPLDPTRLFGWQSANTLNSTETSELPHFSSPHLVGRFALVENLDFLYYLRHGRP SFAFATFLVQQLSVCSDVPLLLQQVWQQTYSLALQSFNVVSVTSAAVCFCELLGICSLKL RVDVRASNAIMQHWSQDNTQLLHTLVSKAVKLAEAEPGAAEDLIGYLEAAVTDSLEQKGI SRSSYEAAQEWALPVHFCQLHRLKLSSVYPAHCTDDGQFIHFLLFVQLHSFPPQQVRSLA AQFGPTLRAHLSLAFQDLQVSSQRRWPHGSEEQPVSLNASEAPGSSEHPRELFQVLLQSQ EEAAPCRYLLQEALVQRCPTLAVMAACQQGAELLPGLCVWLLTSVDDGASGEATAHLAEA PQHHEWTLHDLSIIWRTLLGRGHVRPLLRGFELFQRDCPLVLVLRMFELCCDYRNFSEAK EKLLDFQRTLITMRNGGPVPPGGLPLQWVESQASVLLLTMLQRCSSQYDLHRLLQLLADV DKLLKSNGPDFRKLSQLSQLLQGSEVSLSPRLLQCSSPSVQQEEFQAAVDALQARGRYSQ ARQVALLAGLPVHRLLLSQLLQEVNSQRSKRQWRRLETRVGLWRRCHEQLKAESADPDSA SRFFLSQAETATADSLEAATELLEVQERCLLLCLAAHWLSQLGPAPTGQLEHLEEKLWTG RVRRHVLAAAMEKESVFKLPPPAFTPEMNPYEALMKEFSFSNISGLNTESCLRLEGLPGP GLDREEPSTDSPLSPEERSALAALIGQLLEEGSIHEASRVCRYFSLYHRDMWVVLRCRGL ASGDLNLEPQEEAAEVLPKKSMTSSPSMSSLLSFVMLPLPEDQVAGQLQKLVDQCRHGKN YCKQVLGLYQLSKELQCSFRQMCREEPRSVLEKLLLSEQPERFRKARAFVRAQRLTADAV AELVSSAVVRALLACSAHELQPAERQVFRPSEGRDSLVQLVKLCDDPNLVGVKLLENLNA VPLRDLSCIVELLVVAHDCFSLTCNMEGIVRVLQAARHLSHAYLAPGEHYSLLVRLLTGI GRYNEMTYVFDLLHQNHRFEMLLRKKMDIDRGQTSSLKTALLDYIKRCLPADSEKHNMVA LCFSMRREIGENHEMAARTQLKIIESQAWVVTPDLKSSLVKALGLLRDAAESFSKDSCVR QASRCVRLAKLVCLQLHFLNSGSELRVVHLKDAELLEAATALPRCYQVFVVAEAYGYSPD WAQILYQKVVLNGDFVYLEELKRHRPLTSGLFEDIFHKLDGGAPGNVAANVKRLLTHCED VYSRYRLAYQQNLYDVTKTLLQDAKTSGYLSDRLAS NT seq 7311 nt NT seq  +upstreamnt  +downstreamnt atgctggaggcggctcagcggccggagagcagctcaatagaggtgtgcgtgatcccggag aaccggcactgtggcggcgtgacggacatctggagagccgagctggctcccggaggctcc ctgctcggatgtctgggggtccggggccgcctggtggtctggaacccggcggacagagag gctcctccggccgaagtggacgggtgttacgcagacttctcctgggaggaggagcagggg ggaggagccagcagtagctcctccctgctggctgttggagctcagggtgacgtgacgctg ctgcaggtggaggcggagccatcgtcctccatcaccgtcctccgggtctccgggtgtcct gcaggccgcctgctgcagaccgtcagacagcaggaccccgatgtgtgtgagctgcagtcc gtgtgcgtgttgtcgtttgccgccggccgcagctgcgtgctgctgaaccgtgattggctg ctgcagctgcagtggaggcaggcggaggaggagccgcagacgaaggaggagccgcagacg aaggaggagccgcagacggcgtcctgctgcaacatccgtctgactgacgacggcggacgc tacgccgtccaccactgcgtctgcagagacttcctgtttgtcctcagcgccgccggactc atatctgtgtatcatgtgaccgatggcagtctgctggccagcatcgacctcccggcttac ctgacgtctctccaggccgaggacgaccttgtctcctcctccttctcctcctgcttctcc tcctccagctcctccttctgcctcctccaggtgtccactgacctcagcacagccgtggcc gtcactcagtctcacgccgccgtcgccgtcgacctcgaccgctacttcagattgtatcca gaccacctgctgtgtgctgccgccccccaacggccccccatccggccccagacccccaca gaccaggacggcctgcccagctccgtctgcagcctcgccgccctcggggcgcccttcagc gccgaccgctcctgggaagctcgtctggcctccatgtacagccgagctcagaagtctgca gctccctcctcctcctggtcctcctcctggtcctcctcctggtcctcctcctggtcctgg tcctcctcgctcaaccccccaaggccccacagagcgtcgtcctcagcccacagcagggtg ccttgcggcggggcgaccgcggccttctccgcccccgagcggtccgctccgtctctgctc accgtgtccgagttctccgcccagctgaccttcgcctcccccgggaaccgccggaccacc gtggcattgtgggactttgagtccggaagagtgagccaccacgaggcggagggcgaggcg gctccggtccagcactgcagagagaggcagcaccgactgctgctgaaggagtctggagtc ttccaggtcctgttctcggtgtcccagcaggatttgctcagcaggttgatgttgttcggc agcgcagcgacagtggacgcagtctgtcacctgaacagctgggggcgctgctccatcccc gtccacgccctgcaggcgggcctgaagaaccgtcagctggacacggtggacttctacctg aagagtaaagaaaaccttctggtccctgatgccgaccagccggcggcctccacgcggagc ctcagcgctcgtttccaggagttgtgtcctgcgttggacctcctctgttcggccgtcaga gactcaaacagtgaagctcagagccgtcagttctctgagcagctgctcaacgtcaccatg accttcgtcaacacacagatccgctcagtcctgtccaacacacagctcgaggacgagggc gtgcgcgactgtgtggacgctctggaccgctacgtcaccgagctaaggagctacatgaag aagttcccctggaccgcaggaggcgacgccaccgactctgctgaccgcactcaggaggag gagaaagagggggaggaggaggagaagagagacgagtgggagcagctgccgacagaggaa gtggtctgccagtccgtcctgaccaatcagattctaagagctcaggccgtcctgaggagg cggagccggccggagcagcgcctgtcggctctgaggatggagggtctgcgtcaggtgttc tgctgcctgcagcaccgagacctgcagaccgccaacgcgctgctcatcaacatgggtttc agcgtgaagaagcagctccacagcgtctgcctctacaccgacgacaaggaccttcgggag tttgtggtggaggagctgtcggggcggagtcattttccggaggaggaggtgcagagtgtg gcgttcatcggccagatggagaggttggggtccctgcctgcagcccggcgccacgcagac gccacgccccacaggccggtccaggtccagatggtccgccggtgggggggtggaggcgat gatcttctggaggagctggtgggacagaggaggtctgcggtggaggaggaggagcagaaa gccgggctctggaggaacctcaggctggactgggtgaggaactgggacccgagctgccag accgccgtgctcctgtccagactgcatcacacagaggtgacgtcctgcgacccggccgtg ttgtggcgttatctcaccgctctgcacgaccagcgccgggtggtggactggatccagaac cagcagacccccgggggctcccggtggcccgagctgaccccagagctggtggacgacaac acggcctgcagcgcctacatgagggaggagatcctggacctgctggccaggagaggcctg ttcgtcccggaggagctggcggacctggagcagctgctgtggaggctggctcagggtggg ggggtgatggccctgcccccccccgtccctcggtaccgctcccccctcggcctcgacctc cacggcctcttcatctccttctgtgtggaccgcggcttccagtacctgctgtacacctac ctggagcaccacaggttgacgcccaggaactgtcccctgttgaccaatcagagcctgtct gagagccagccctggtttgagatgctggtgaagatccaggagatcaccagagatctgtca gatccaggtctggtcttccaggccagtttaaccagtgctcaagtgctgttgccaggcagc caggcgtctctaagcagtctgctgttggagggacacagtctcttggccctggcggccatc atgttcgcgcccggagggatcaaccaggtggtggttcagggtgaaaggtcgggcaggtcc gagaggacggtggacccccagctcctgaagatggcgctggccccccacccgaaactgagg gctgccctgttcccctctgggccccgaggaaccggctcgtcctctgacgtctccgtctac cacctgctgcagtcgctccacccgctggaccccaccaggctgttcggctggcagtcggca aacaccctcaactccaccgagacatcagagctgcctcatttctccagccctcatctggtc ggcaggttcgctctcgtggagaacctggacttcctgtactacctccgtcatggccgaccg tcctttgcgttcgccaccttcctggtccagcagctgagcgtctgcagtgacgtcccgctg ctgctgcaacaggtctggcagcagacgtacagtttggccctccagagttttaatgttgtg tctgtgacgtcagcggccgtctgtttctgtgagcttctggggatctgtagcctcaaactg agggtcgacgtcagagcctcgaacgccatcatgcagcactggagccaggacaacacacag ctactacacactctggtgtctaaagctgtaaagctggcagaggcggagcctggagcagca gaagacctgattggctacctggaagctgcagtgacggacagcctggagcaaaagggcatc agcaggtcgtcctacgaggcggctcaggagtgggcgttgcctgttcatttctgtcagctc caccgtctgaagctcagctctgtttatcccgcccactgcactgatgacggacagttcatc cacttcctgttgttcgtccagctgcacagcttcccgccccagcaggtgaggtcactggca gctcagtttggtcccaccctgcgggcccacctgagtctggcgtttcaggacctgcaggtg agcagtcagaggaggtggccccacggctccgaggagcagcccgtgtccctgaacgcgtcg gaggcccctgggagctcggagcaccccagggagctgttccaggtcctcctgcagagccag gaggaggcggcgccctgcaggtacctgctgcaggaggcgctggtccaacgctgcccaacg ttggctgtaatggccgcctgtcaacagggggcggagcttctgcccggcctctgcgtgtgg ttgttgacttccgttgatgacggcgcatcgggggaagccaccgcccacctggccgaagcc ccccagcaccacgagtggacactgcacgacctgtcaatcatctggaggacactgcttggg cggggccacgtcaggcccctcctacgaggcttcgagctcttccagcgggactgtcctctg gttctggtgttgaggatgtttgagttgtgttgcgactacaggaacttctctgaggccaaa gagaagctgttggacttccagaggacgctcatcaccatgaggaacggaggcccggtgccc cccggtggcctccccctgcagtgggtggagagccaggcctccgtgctgctcctcacgatg ctgcagcgctgctcctcccagtacgacctccaccggctgctgcagctgctggccgacgtg gacaagctcctcaagtccaacggtccagacttcaggaagctgagtcagctcagccagttg ctgcaggggtcagaggtcagcctgtcccccaggctgctgcagtgcagttcgccctccgtc cagcaggaggagttccaggccgcggtggacgctctgcaggccagggggcgctacagccag gccaggcaggtcgccctgctggccggcctgcccgtccaccgcctgctgctcagccagctt ctccaggaagtaaactcccagaggtccaagcgccagtggaggaggttggagacccgagtc ggcttgtggaggagatgtcacgagcagctgaaggccgaaagcgctgatccggattcggcc tcccggttcttcctgtcgcaggccgagacggcgaccgccgactcgctggaggctgcgacc gagctgctggaggtccaggagcgctgcctgctgctctgcctcgccgctcactggctctcc cagctcggcccggctcccaccggccagctggagcacctggaggagaagctgtggaccggc cgggtgcgacggcacgtcctcgccgctgccatggagaaggagagcgtcttcaaactgccg ccacccgccttcacgccggaaatgaacccgtacgaagcgctcatgaaggagttctccttc tccaacatatcgggcctgaacaccgagagctgtctccgtttggaggggctccccggtccc ggcttggaccgggaggagccgagcaccgactcgccgctgagcccggaggagaggagcgct ctggctgctctcattggtcagttattagaagaaggcagtatccacgaagccagccgggtc tgccgttacttctccctgtaccaccgggacatgtgggtggtgctgcgctgcagaggtctg gcctctggagacctgaaccttgaaccacaagaggaggcggcggaagttctaccaaagaag agcatgaccagctctccctcgatgagcagcctgttgtccttcgtgatgctccccctcccc gaagaccaggtcgccggccaactccagaaactggtggatcagtgtcggcacggcaaaaac tactgcaagcaagtcctgggcctgtaccagctctccaaggagctgcagtgctccttccgc cagatgtgccgggaggagcctcgctcggtgctggagaagctgctgctgtcggagcagccg gagcgcttcaggaaagctcgggccttcgtcagagcgcagcgtctcaccgcggacgccgtg gccgagctggtgtcctcggccgtggtccgggcgctgctggcctgctccgcccacgagctg cagcccgcagagaggcaggtgttccggccgtctgagggtcgggactcactggtccaactc gtcaaactgtgtgacgatccgaacctggtgggagtcaaactgctggagaacctcaacgct gttcccctgagagacctgagctgcatcgtggagctgctggtcgtggctcacgactgcttc agcctcacctgtaacatggagggcatcgtcagagtgctgcaggccgcacgacacctcagc cacgcctacctggccccgggagagcactacagcctgctggtgcgtctgctgacgggcatc ggcaggtacaatgagatgacgtacgtcttcgacctgctgcatcagaaccatcgatttgag atgctgctgaggaagaagatggacatagacagaggacagacctccagcctgaagaccgcc ctgctggactacatcaagcgctgcctccctgctgacagtgagaagcacaacatggtggcg ctgtgcttcagcatgaggagggagatcggagagaaccacgagatggcagcgcgcacgcag ctgaagatcatcgagagccaggcctgggtggtcactcctgatctgaagagctcgctggtc aaagcgttgggtctgctgagagacgctgcagagagcttctccaaggactcatgtgtgcgt caggccagccgctgcgtccgattggctaagctcgtctgtctccagctccacttcctgaac tcgggctctgagctgcgcgtcgtccacctgaaggacgccgagctgctggaggccgccacg gcgttaccacggtgctaccaggtgttcgtggtggcggaggcgtacggctacagtccggac tgggcccagatcctgtaccagaaggtggtcctgaacggagacttcgtttacctggaggag ctgaagcgccaccgcccgctgacctcgggcctgtttgaggacattttccacaagctggac ggcggcgctcccggcaacgtcgctgccaacgtgaagcgcctgctgacgcactgcgaggac gtgtacagccgctaccggctggcctaccagcagaacctgtacgacgtcaccaagacgctg ctgcaggacgccaagacctctggctacctgagcgaccggctggccagctga

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