Cyclopterus lumpus (lumpfish): 117731813
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Entry
117731813 CDS
T09199
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B isoform X1
KO
K06636
structural maintenance of chromosome 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04110
Cell cycle
clum04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117731813 (smc1b)
04114 Oocyte meiosis
117731813 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clum03036
]
117731813 (smc1b)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
117731813 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
117731813 (smc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_23
AAA_29
AAA_13
PBS_linker_poly
Motif
Other DBs
NCBI-GeneID:
117731813
NCBI-ProteinID:
XP_034390178
Ensembl:
ENSCLMG00005016627
LinkDB
All DBs
Position
6:4176645..4188636
Genome browser
AA seq
1253 aa
AA seq
DB search
MGYLKQIDIENFKSWRGKTVIGPFMRFNCIIGTNGSGKSNVMDALSFATGERVASLRVKH
LRDLVHGAHIGRPVRDTARVALRCCDDEDQETVFSRSILGDSSQYRIDDVQVTLTKYIEE
LEKIDIVTKARNCLVFQGAVESIALKDPKERTKMFECISQSREYAAEYEMKKKALLNAKE
DTQFHFNKKKSATVERKQVSQEKIEAQKYQTLLDNLHQNRLQLSLAELFCNEKGINVLSD
ILREKQLAAAAKNNTLVKEEQTVKTYKKEHGRLTREQQHIEKEIRAQEHVLSQCRSQYIK
ARVNTSHHMKKAGEVRDALRKSQKLIAIKEQELAEERQEISELERTWRNYEKEQKKKGAS
LKRDIQLDEDQLERYKELKELARKQGAVLGQQAERLHWEVTADNEKMAFDQRRKKEVEVA
VRNNQTQLEDLIRRADKLEEYTKTCKSSLEEYRQLEESLSAELQRGRQRSEELKQELGQV
MEELGNAHLDSQESRCQQRRNELLDRLRSLFPETVFGRLSDLCSPVHKKYQLAVIKVFGR
FMNAIVVSSEKVARECISFIKEERAERETFLPIDYLDMSPMNERLREMPGAKMVVDVVQV
NNATGSAQLRKVVQFVCGNALVCETIKEARSVAFDGQVRLKTVALDGTLFTKAGVISGGS
SSLRTKARCWDEKDMMRLKARKDQLTAEMRVSQHTKYQVTQDLMKLKRKDSDLKQTIAQA
QGAKTRLKYSNADLDNIQKKNIPHCQAEISRMESELANLDSQIQMQQESVEAKEDEMKSI
RDRIDQMEDTVFFDFCAEIGVDCIREYEQEHLKQQTELDRKRLEFESQCTRLNARLEYEQ
DQLTQQRKKLQKMEETIDKEEKTMAERREDEEKLLAAVEDGQKKQLELNDQLLSQKSQVA
AAKAELDQKTQSLKETNKELVKLQREVMSAESALEQKRLARHNMLLACKIQGLPIILLSG
NLDEISEMQLDTESESTSTTLNIFEREARLLIDYSGLDAELTSLQTEKEVEAFLEKLRES
VSSVEGVLHRTTAPNLKALAKMREVKDMLQGVTDAFEASTKAARKCNQEFEQVKDRRLNL
FNRCFEHVCVVIDQIYKRICRNNSAQAILSAENPEEPYLGGINYNCVAPGKRFMSMDNLS
GGEKAIAALALVFAIHSFRPAPFFILDEVDAALDNTNIGKVTSFIREQSRENMQIIVISL
KEEFFSKADALLGVYSDFEECMFSRILTLDLRPYPLVDEDSERQADVEKTGLV
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgggctatctcaaacaaattgatattgaaaacttcaagtcgtggcgaggaaaaaccgtc
atcggtcccttcatgcgatttaattgtataattggcacaaatggttccggcaagtccaat
gtgatggacgccctgagctttgccaccggggagcgggttgcctctctgcgggtgaagcac
cttagggacctggtccacggagcccacatcgggcggccggtccgcgacactgcccgcgtg
gccctgcggtgctgcgacgacgaggaccaggagaccgtcttctcccggagcatcttaggt
gactcctcccagtatcgcatcgatgatgttcaggtcacactgaccaaatacatcgaggag
ttggagaagatcgacattgtgaccaaggctcgaaactgtctggtgttccagggggcggtg
gagtccatagctctgaaggacccaaaggagaggaccaagatgtttgagtgcatcagtcag
tcgagagagtacgctgcagagtacgagatgaagaagaaggccctgctgaacgctaaagag
gatacacagtttcacttcaacaagaagaagtcagctaccgtcgagaggaaacaggtttcc
caggagaaaatagaggcccagaagtaccagacgctgctggacaaccttcaccaaaaccgc
ctgcagctgagcctggctgagctcttctgtaatgaaaagggcatcaacgtcctcagcgac
atcctgagggagaaacagctggctgcagctgccaagaacaacacactggtgaaggaagag
cagacggtcaaaacctacaagaaggaacatggacgtctcaccagagagcagcagcacata
gagaaggagatccgtgcccaggagcatgtcctgtcccagtgtcgatcccagtacatcaaa
gccagagttaacacctcccatcacatgaagaaggccggggaggtccgtgatgccctgagg
aagagccagaagctgattgctattaaagagcaggagctagccgaagaaaggcaggagatc
tctgaactggagaggacctggaggaactatgagaaggagcagaagaagaagggagcctcg
ctgaagagagacattcagctggatgaggatcagctggagcgatacaaagagctgaaggag
ctggcccgaaagcagggggcggtcctcggccagcaggcagagaggctgcactgggaggtg
acagcggacaacgagaagatggctttcgaccagcggcgtaagaaggaagtggaggtcgcc
gtcaggaacaaccagactcagctggaagatttgatacgcagagcagataagctcgaagag
tacaccaagacctgcaagtcgtcccttgaagagtaccgtcagctggaggagagcctcagt
gcggagctgcagcgaggccgccagcgcagcgaggagctgaagcaggagctgggccaggtg
atggaggagctggggaacgcccacctggacagccaggagagcagatgccagcagcgacgc
aacgagctgctggacaggctccgcagtctcttcccagaaactgtgtttggccgtctgtct
gacttgtgcagccccgtccataagaagtaccagctggctgtcatcaaggtgtttggccgc
ttcatgaacgccatcgtcgtgtcctcggagaaagtggctcgtgaatgcatctctttcatc
aaggaagagagagccgagcgcgagaccttcctgcccatcgactacttggatatgagtcct
atgaatgagcggctgagggagatgcccggcgccaagatggtggtcgatgtcgtacaggtt
aacaatgccaccggctccgctcagctcaggaaggtggtgcagtttgtctgcggtaacgcg
ctggtgtgcgagaccatcaaagaagcaaggagcgtggcctttgacggacaagtgcgcctt
aagacggtggctctggacgggacgctgttcacaaaggcaggcgtgatctccggaggctcc
agttccctccggaccaaagcccggtgctgggacgagaaggacatgatgcggctgaaggcg
cgcaaggaccagctgacggcagagatgcgcgtaagtcaacacacaaaatatcaggtcact
caggatttgatgaagctgaagcggaaggactcagacctgaagcagacgattgctcaggct
cagggcgctaagacccgcctcaaatactccaatgcagacctggataacattcagaagaaa
aacatccctcactgccaagcggagatttctcgtatggagagcgagctggcgaacctggac
tcccagatccagatgcagcaggagagcgtggaggcaaaggaagacgagatgaagagcatc
agagaccggatcgaccagatggaggacacggtgttctttgacttctgtgctgagatcggc
gtggactgcatcagagagtacgaacaggagcacctgaaacagcagacggagctcgacagg
aagcggctggagtttgagagtcagtgcacccgcttgaatgcacggctggagtacgaacaa
gaccaactcacacagcagaggaagaaactccagaaaatggaggaaaccatcgacaaggag
gagaaaaccatggccgagcggagggaggatgaggagaagcttctggcagcggtggaggac
ggtcagaagaaacagctggagctgaacgaccagctgctgtctcagaagagccaggtggcc
gctgccaaagctgagctggaccagaaaacccagagcctgaaagagaccaacaaagagttg
gtgaagctccagcgggaggtgatgtctgcagagtcggccttggagcagaagcgcttggcc
aggcacaacatgctgctggcctgcaagatccagggtctgcccatcattctgctgtcgggg
aacctggatgaaatcagtgagatgcagctggacactgaatctgaaagcacttcaaccacc
ttgaacatcttcgagagagaggcacgactcctcatcgactactctggcctggacgcagaa
ctcacgagtctgcagacggagaaggaggtggaggccttcttggagaagctgagggagtcc
gtctcctccgtagagggagtgctgcatcgcaccacggccccaaacctgaaagctctggcc
aagatgagggaggtgaaggacatgttacagggagtcacagacgcgtttgaagccagcacc
aaagcagccagaaaatgcaatcaggagttcgagcaagtcaaagaccgacgcttgaacctc
ttcaaccggtgcttcgaacacgtgtgtgtcgtaatcgatcagatctataaaaggatatgc
aggaacaacagcgcccaggccatcctgagtgcggagaatccagaagagccgtatctcgga
ggcatcaactacaactgcgtggcgccggggaaacgcttcatgtccatggacaatctgtcc
ggtggagaaaaggccatcgccgccctcgccctggtgttcgccatccacagcttccgtcct
gctcccttcttcatcttggacgaggtggacgccgcgctggacaacaccaacataggcaag
gtgaccagtttcatcagagagcagtctcgggagaacatgcagatcatcgtcatctccctg
aaggaggagttcttctccaaggccgacgctttgctgggagtctactcggactttgaagaa
tgcatgttcagccgcattctgaccctggacctgcgaccctaccctctggttgacgaggac
agcgagaggcaggcggacgttgagaagacgggactcgtgtag
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