Cyclopterus lumpus (lumpfish): 117732025
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Entry
117732025 CDS
T09199
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117732025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117732025
03009 Ribosome biogenesis [BR:
clum03009
]
117732025
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117732025
Spliceosome [BR:
clum03041
]
Complex A
U2 snRNP components
U2 related factors
117732025
Complex B
117732025
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117732025
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
90S particles
Helicases
117732025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
nSTAND3
AAA_29
T2SSE
Motif
Other DBs
NCBI-GeneID:
117732025
NCBI-ProteinID:
XP_034390525
Ensembl:
ENSCLMG00005005603
LinkDB
All DBs
Position
1:16386101..16395173
Genome browser
AA seq
760 aa
AA seq
DB search
MSKRHRLDLGDDYSSTKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDPKPSSVPAI
STAPVPCLTPIKQMAMQQQINPFTNLPHTPRFFEILKKRLQLPVWEYKENFSDIITRHQS
FVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDIMLGQ
EVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREVDDLGPDVGDIKIIPLYSTLPPQ
QQQRIFEPPPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFK
QNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRALCT
GFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKP
EWLVKIAPQYYEMSNFPQCEAKRQLERIVAKLESKEYSQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgcctggatttgggcgatgactactcctccacgaagaagaggtct
gaagggagagaccgggaccgggacagggaccgggaggaccgctccagggacagggatcga
gacagagacagagacagagaccgggacagagacccaaagccctctagtgtcccggctatc
agcactgcacccgtgccgtgcttaacacccatcaagcagatggctatgcaacagcagatc
aacccattcaccaacctgccgcacacaccacgcttttttgagattctgaagaaaaggtta
cagcttccagtgtgggagtacaaggaaaacttcagcgatatcatcacacgtcatcagagc
tttgtccttgttggagaaactggctctggaaagacaacacagatcccacagtggtgtgtg
gacatggtgaggggcttgcctgggcctaagcgggcagtagcctgtactcagcccaggaga
gtggcggctatgagcgtggctcaaagggtggcagacgaaatggacatcatgcttggacag
gaagttggctactccatccgatttgaggactgcagctctgctaagactatactcaagtac
atgacagatggtatgttactaagagaggctatgaatgacccgttgctggagagatatggt
gtaatcattctggacgaagcccacgagcgaactctggccacagatatcctaatgggagta
ctcaaggaggtggtgcgtcaaagacccgatctgaaggtgattgtcatgagtgccacgcta
gatgccgggaagttccaggtgtactttgacaactgtcctctcctgactatccctgggcgt
acacaccctgtagaaattttctacactcccgaaccagagcgagattaccttgaggcagcg
atccggactgtcatccagattcatatgtgtgaggaagaggaaggtgactgccttctcttt
ctcactggtcaagaggaaattgatgaggcctgcaaacggattaagcgtgaggtagatgac
cttggacctgatgtcggagacatcaaaatcattccactgtattcaacattgccaccacag
cagcagcaaaggatctttgagccgccgcctccaagaaagcccagtggtgctataggaaga
aaggttgtggtttcaacaaacattgcagagacctctctgacaattgatggtgtggtgttt
gtcatcgatcctggatttgccaaacaaaaggtttacaatccccgtatcagagttgagtct
ttgctcgtcacagccatcagtaaagcttctgcccagcagagggcaggacgagccggcaga
acgcgtccagggaaatgtttccgcctctacacagagaaggcctacaaaacagagatgcag
gataacacataccctgagattcttcgatccaacttgggatctgttgtgctgcagctgaaa
aagttgggtattgatgaccttgtgcattttgacttcatggatccaccagctcctgagaca
ctgatgagggcccttgagctgctgaattacctagctgctctcaatgatgacggtgacctg
acggagctgggctccatgatggcagagtttcctttggacccccagctggctaagatggtc
attgccagctgcgagtttaactgctcgaacgagatcctttccattactgccatgctgtca
gtcccacagtgttttgtccggcccacggaggctaagaaggcagcagacgagtccaagatg
aggtttgctcacatcgacggagaccacttgacgctgctcaacgtctaccacgccttcaaa
caaaaccacgaggctaaccagtggtgttatgacaattttgtcaactaccgttcactgatg
tctgctgacaacgtgcgtcagcagctatccaggatcatggaccgcttcaacctgccccgc
cgtagcacagagttcaccagcagagattactacaccaacatccgcagagcgctctgcacc
ggcttcttcatgcaggtagctcatttggagcgaacaggtcattacctcacagtcaaagac
aaccaagtggtccaactgcacccatctacagtcctggaccacaagcctgagtgggtgctc
tacaatgaatttgtcctcaccaccaaaaactacatccgcacgtgcacagacatcaaacca
gagtggttggtgaagattgcaccccagtactatgaaatgagtaacttcccacaatgtgag
gcaaaaagacagcttgagcggatcgttgccaaactagagagcaaggagtattcccagtac
tga
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