Cyclopterus lumpus (lumpfish): 117732115
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Entry
117732115 CDS
T09199
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117732115 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117732115 (edc4)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117732115 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
117732115 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
WDR55
PIN_8
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
117732115
NCBI-ProteinID:
XP_034390709
Ensembl:
ENSCLMG00005000656
UniProt:
A0A8C2WLF2
LinkDB
All DBs
Position
6:23020603..23042166
Genome browser
AA seq
1391 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSSDALSDGLRMPSFNGELNGLLGAAGLLGSTDR
SSMSDSTRPISTDLCSTQECQIICLSGDDGSTCIPITSNNVEIVASQDTSINSKARGSNK
VKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVSFTERSLLKGFTGA
VTDLAFAHLDSSLLGCVDEAGNLMVWQLTCIGSKILDQMVVHIRRPEDSPLNSHRRLIWC
PFIQDEENQDDTSQTLALLHEDLAEVWDLEILRANHSSWPVDEADVKEGLIQINGHTQRV
SEGALSPDGTVLATASHDGYIKFWQIYIEGVQDKPRCLHELRPHGGRPLSCLLFCDNHKR
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLPSLKASLDLASEF
LVLTDVQRKVLYVMELRQDLDKGKASFTAVSEFLLTHPVLSFGVRDVAHCRLRHTEVLPA
EEESEIMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLSSSSTVFLPNSDPQD
GFVGFSDHLTDQSSDKESGSGSQTDLRKIPSLPATTDFLSNSGASSGTKLMTPDAFMTPS
TSVPASPGSSASSLTIVTAISSNSDSTNRARDEVSQSPNRAENINNSSSSSSSLTLSTSS
PRAGSAVLLPGLENLPALASPSGPLALDSPQVLDSPLLPPLASPTRARSPDVISSASTAM
SQDMPEIASQTLQLQRGLVSSLEPLPLSALQTDSMASAASALHLLTSPRTANNSLMPLEL
GGADGLVGGAVESEPRLSHTPSLLENALSQENPGAGGGSSDGSIGHTPWPAAPDITRETR
NSLRDNGLGDCSREESKDRHLGSPYHRRSYHLAHNDSQDAGAEQSDPDDELASLASSSGN
CGSRSSHRLPVKDWKTSPRASPKVKRKTKKDDNELSQSRQMDSGQMNAEVQDELLMLLRS
QQRELTDLRGQIEAMQSTIMAQVEHVLTNHQEQEQRRLERVLAESQNHQQQLQEQLGQQL
SNTLSSVLTNRMDKVLREEMKKTVPSAISKSLEPVTGQLSNTIAAKLTAVEITLKDNVSK
VVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQGIVLPVFERGCQSMFQQINDSFKQGTQE
YIQQLESHMKNRKQREQETRDPVIGQLQQTIESFQSSTDQLTNNITANVRAEVQHQIQMM
VGNLQESILSHVQRIVKGEVTLAMKEQQVVVTSSIMQAMRSAASTPVPTAHLDYQTQQAN
ILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQLSS
NLTTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFAFLQQDPHSPLSKRARR
LMMMLQGLVSH
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaatatagacattgagggtgcgacccagcatctccgggacatcctc
aagctcgaccgccctgggaacagctccgatgcattgagtgatggcctgagaatgccatct
tttaatggagagctgaatgggttattgggagcagccggccttctgggaagcaccgatcgg
tcatccatgtccgactctaccagacccatctccacagacctctgcagcactcaggagtgt
cagataatctgtctttctggtgatgatggctccacctgtatccccatcacctccaacaat
gtggagatagtggcgagtcaggataccagcatcaacagcaaggctcgtggcagcaacaag
gtgaagattcaacctgttgccaagtacgattgggaacacaagtattattatggcagactg
atagccgtgtccaactccttcctggcctacgccatcagaggagccaacaaccacgcaatg
attcgcgtcctgagcgtgagctttactgagcgctctctactgaagggcttcactggagcg
gtcacagatctggcttttgcccacctcgactcctcgctgttgggctgtgtagatgaggcg
ggcaacctgatggtgtggcagctcacctgcattggaagcaagatactggatcagatggtg
gttcatatccgacggccagaagactctccgctgaactcccaccgccgcctcatctggtgc
ccgttcatccaggatgaggagaaccaggacgacaccagccagaccctagcccttctacac
gaagacctggctgaggtgtgggacctggagatcttgagagccaaccacagcagttggccc
gtagatgaagctgatgtaaaagaaggcctcatccaaatcaatggacatacccagcgagtc
agtgagggggccctttctccagatggaaccgtgttagccacagccagccacgatgggtac
atcaagttctggcagatatacatcgaaggggtacaagacaagccgaggtgtcttcacgaa
ttgcggccccacggaggacggcccctctcttgccttcttttctgtgacaaccacaaaaga
caggaccctgaggttccattctggcggttccttataactggagcggatcagaaccaggag
ttgaaaatgtggtgcactgtttcctggacctgcttacagaccatcaggttttccccagat
ctgttcaactcctcagttctgcctagtctgaaggccagtctggacctcgcttctgagttt
ctcgtcctcaccgacgtacagaggaaggttctgtatgtgatggaactccggcaggacctg
gacaaaggaaaggccagtttcacagcggtgtcagagttcttgctgacccaccccgtgctc
agctttggggtccgggatgtcgcccactgccgattgcgacacactgaggtcctccctgca
gaggaggagagtgagattatgacaacagagggaactcaaggaccaacagagtccaagtct
gggatccaaattaaactttactgcgtccacaccaagagtctgcaggatgtccagatctgg
tttcagcccaacttgagttccagctccacagtcttcttgcccaattctgatcctcaggat
ggttttgtagggttttcagaccatcttactgaccagagctccgacaaggaatcaggaagt
ggctcccagaccgacctcaggaagatcccatcacttcctgctaccactgacttcctgtca
aactcgggtgccagcagtggcaccaagctgatgactcccgatgccttcatgacaccaagc
acttcggtaccagcatctcctggcagcagcgccagcagtctgaccattgtgacggctatc
agcagcaactctgactcaactaacagagctagggacgaagtcagccagagtccaaacaga
gcggagaacatcaacaacagcagcagcagcagcagcagtctgacactctctaccagcagc
ccgagagctgggtctgctgtgcttctgcctggactggagaacctaccggcattagcttcc
ccgagtgggcctctcgcactcgacagccctcaggttctggattctccccttctgccccct
ctggcctctccgaccagggcccgctctcctgacgtcatctcttccgcctccacagccatg
tcccaggacatgccagagattgcatcccagaccctgcagcttcagcgcggtctcgtgtcc
agtttggaaccgctacctctctctgctctccagacggacagcatggcgtccgccgcatcc
gccctgcacctcctcacctccccacgcacggccaacaacagcctgatgcccctcgaactt
ggaggtgctgacgggctagtgggcggggcagtggagtctgagcccagactcagtcacacc
ccatccctactggagaacgccttatcacaggagaaccccggggccggtggagggtcttca
gatggtagtattggccacacaccgtggccggctgctcccgacatcaccagagaaaccagg
aacagtctcagggacaacggtcttggagactgttcaagagaggagtcgaaggacagacac
ctgggctcaccgtaccaccgacgctcctatcacctcgcacacaacgacagtcaggacgcc
ggcgcggagcagagtgaccctgacgacgagttggccagcctggcatcgtcctcaggaaac
tgtggctctcgttcctctcacagactaccagttaaagactggaagacctcgccgcgagcc
tcgccaaaagtgaagaggaagaccaagaaagatgacaatgaattgtctcagtccaggcaa
atggactctggtcagatgaatgccgaagtacaggacgaactgttgatgctcctgcgcagc
cagcagagggagctaactgacctgcgtggtcagattgaagccatgcagagcaccatcatg
gcccaagtagagcacgtcctcaccaaccaccaggaacaagagcagcgccgactggagcga
gttctagcagagagtcagaatcatcagcagcagcttcaggaacaactcggccagcagctc
agcaacaccctcagctcggtgctgaccaacagaatggacaaagtgcttcgagaggaaatg
aagaagacggtcccgtcagcgatctccaagagtctggagccagtgacggggcagctgagc
aatacaatcgctgccaagctgaccgctgtggagatcaccctgaaggacaatgtcagcaag
gtggtcaagtccaagaacacaacggacgctattggccgagcagcggccgaggccatgcag
gggcccatccaggcagcctacaaagacgccttccagggcatcgtgctgcccgtgtttgag
agaggctgccagtccatgttccaacaaatcaacgacagctttaaacaaggcacacaagaa
tacatccagcagcttgagagccacatgaagaacagaaagcagagggagcaggagacacgg
gaccctgtgattggccaactccagcagacgatcgagagcttccaaagctccaccgatcag
ctgaccaataacatcacggccaacgtgcgtgcagaggtccagcaccagatccagatgatg
gtgggaaatctgcaggagtctattcttagccatgtgcagcgaatcgtcaaaggggaggtg
accctcgcaatgaaggagcagcaggtggtggtcacctccagcatcatgcaggcgatgagg
tcagcggccagcacgcctgtcccaacagcacacctagactaccagacgcagcaggccaac
atcctgcagctcctccagcagggccagctgaaccaggctttccagcaggcgctgtctgcg
acggatctgaacctggtcctgtatgtgtgcgagaccatcgactctcaacaggtgtttggt
cagcacccctgccctctcagccagcccgtgctgctgtcgctcatccagcagctctcctct
aacctcacgacccgctctgagctcaaaatcagctacctggaggacgccgtgatgaatctg
gaccatggcgacccgctgacgagagaccacatgtcctccgtgttggcccaggtgcgaccg
aagctgttcgccttcctgcagcaggacccccacagcccgctcagcaagagggcgcggcgc
ctgatgatgatgctgcagggtctcgtcagccactag
DBGET
integrated database retrieval system
