Cyclopterus lumpus (lumpfish): 117732141
Help
Entry
117732141 CDS
T09199
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117732141 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117732141 (sf3b3)
03041 Spliceosome [BR:
clum03041
]
117732141 (sf3b3)
03036 Chromosome and associated proteins [BR:
clum03036
]
117732141 (sf3b3)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117732141 (sf3b3)
Spliceosome [BR:
clum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117732141 (sf3b3)
Complex B
117732141 (sf3b3)
Complex C
U2 SnRNP specific factors
117732141 (sf3b3)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117732141 (sf3b3)
TFTC complex
117732141 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
117732141
NCBI-ProteinID:
XP_034390761
Ensembl:
ENSCLMG00005010627
UniProt:
A0A8C2XNH4
LinkDB
All DBs
Position
6:complement(21513461..21537044)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHASKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVCSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPLDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLIVIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLINPIQGTTLDQVQLEQNEAAFSVAVCRFPNTG
DDWYVLVGVAKDMILNPRSVSGGFIYTYRLISGGEKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTSIHTIGQRVIVTDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMACADKFGNISIVRLPANTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETVLSLQKTTLIPGGSESMVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacatcaccctccagcgtgccacaggcatcactcatgccatccatgga
aacttctcaggaaccaaaatgcaggagattgtcgtttccaggggaaagatcttggagtta
ttgcggccagatgccaacacggggaaggtgcacactctgctcacagtggaggtgtttggc
atcgttagatccctgatggccttcaggctcactggaggaaccaaagactacattgttgtt
ggaagcgacagtggtcgtattgtcatcttggaatatcatgcgtcaaaaaacatgttcgag
aagatccaccaggaaacttttgggaagagcggctgccggcgcatcgtccccggacagttc
ctggctgtcgacccaaaaggccgagctgttatgataggagcgatagagaagcagaagctg
gtttatattctgaacagagatgcagctgccagactgaccatctcctctccactggaagca
cacaaggcaaacacactggtctaccatgtagtcggagtagatgttggctttgaaaatccc
atgtttgcctgcctcgagatggattatgaggaagctgacaatgacccgacaggagaagcg
gccgccaacacgcaacagacgctcaccttttacgagctggacctgggcttaaatcacgtg
gtccgcaagtacagcgaggctctggaagagcatgggaatttcctcatcactgttcctggt
ggttccgatgggcccagtggagttctgatctgctccgaaaactacatcacttacaagaat
tttggagaccagccggacattcgctgtcccatcccgcgacgcaggaatgacctggatgac
ccggagcgtggcatgatatttgtctgctcagccacacacaagaccaagtccatgttcttc
ttcctggcccaaactgagcagggagacatctttaaggttaccctggagacagatgaagaa
atggtcacagaaatcaggctgaaatactttgacacgatccctgtagcaacagccatgtgt
gtcctgaagactggcttcttgtttgtgtgttcagaatttggaaaccattacctttaccag
attgctcacttgggtgacgatgatgaggagcctgagttctcctctgcaatgccgttggag
gagggagacacattcttcttccagccccgccccctcaagaaccttgtgctggtggacgag
caggagaacttatcacccatcatgtcctgtcagattgccgatttagccaatgaagataca
ccacagttgtacgttgcctgtggtcgaggaccccggtctactctgagggtccttagacat
ggactggaggtgtcagagatggctgtgtctgagctgcctggtaaccctaacgctgtgtgg
acagtacgcagacatgtggaagacgagtttgatgcctacatcatcgtgtctttcgtgaac
gccactctggttctgtccatcggagagactgtagaggaagtgacagattctggatttctc
ggaacaacgcctactctctcctgctcactgctcggtgaagacgcgctggtgcaggtgtac
ccagacggaattcgccacatccgagcggacaagcgtgtgaatgagtggaagactcctggc
aaaaaaaccattgtccgctgcgcagtgaaccagcggcaggttgtcatcgccctcaccgga
ggggagctggtctactttgagatggacccgtccggtcaactgaatgagtacacggagcgg
aaggagatgtctgcagacgtggtttgtatgagcctcgccaacgttccacctggtgagcag
cgttctcgattcctggccgtgggactggttgacaacactgtccgaatcatctccctggac
ccattggactgcctacagccgttgagtatgcaggccctgccagcccagccagagagtctg
tgtattgttgagatgggaggggtcgagaaacaggatgaacttggagaaaagggaaccatt
ggcttcctctacctcaacataggacttcagaacggtgtgctgctgaggactgtgctggac
ccagtgaccggtgacctgtcagacaccagaacacgctacctggggtcacgacctgtcaaa
ctcttcagagtccggatgcaaggacaagaagctgtgctggcaatgtccagtcgctcttgg
cttagctactcgtaccagtctcgcttccacctgacccctctgtcatatgagactctggag
tacgcctctggctttgcatccgagcagtgccctgaaggcattgtggccatttccaccaac
acactgagaatcttggctttggaaaaattaggagccgtcttcaaccaggtggcctttcct
ctgcagtacactcccaggaaatttgttatccacccggagaccaataacctcattgtgatc
gagacggaccacaatgcctacaccgaggcgaccaaagcccagagaaagcaacaaatggct
gaggagatggtggaggctgctggtgaagatgaacgagaactggctgctgagatggccgct
gccttcctcaacgagaatctcccagaagccatttttggtgcacccaaagctggagctgga
cagtgggcctcgctggtgcgtcttatcaaccccatacagggtacaacactggaccaggtg
cagctggaacaaaacgaagctgctttcagcgttgctgtgtgtcggttccccaacacagga
gatgattggtacgttctggtgggcgttgccaaagacatgattctcaaccccagatctgtg
tccggtggcttcatctacacctatcggctcatcagtggaggcgagaaactggagtttgtg
cacaaaaccccggtagaggacgtgcctttggccattgctccattccagggacgagtcctg
gttggagttgggaaactgttgagaatctatgacctgggcaaaaagaagctgctccgcaag
tgtgaaaacaagcacgttcccaacctcgtgactagcatccacaccatcggccagcgggtg
atcgtgactgacgttcaggagagcctgttctgggttcgttacagacgcaacgagaaccag
ctcatcatcttcgccgacgacacatatccccgctgggtgaccacggcctgtctgctggac
tacgacaccatggcctgtgctgacaagtttgggaacatcagcattgtgcgtctacccgcc
aacaccagcgacgatgtggatgaagaccccacagggaacaaggctttatgggacagaggc
ctcctaaatggagcatcacagaaggctgaggtgattgtgaactaccatgttggtgagacg
gtgttatccctccagaagaccacgctgatccctggaggttcggagtccatggtctacacc
actttgtctggaggcatcggcattctggtcccattcacctcacatgaggaccatgacttc
ttccagcatttagagatgcacatgcgctctgagtttcctccactttgcggcagagaccac
ctcagctttagatcctactacttcccagtcaagaatgtgattgacggagatctatgtgag
cagttcaacagtatggaccctcataagcagaaaagcgtggcagaagagctggacagaaca
ccacctgaggtctctaagaaactggaggacattcgcactcgctacgccttctaa
DBGET
integrated database retrieval system
