KEGG   Cyclopterus lumpus (lumpfish): 117732176
Entry
117732176         CDS       T09199                                 
Symbol
poc1b
Name
(RefSeq) POC1 centriolar protein homolog B
  KO
K16482  centriolar protein POC1
Organism
clum  Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:clum00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:clum03036]
    117732176 (poc1b)
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:clum03037]
    117732176 (poc1b)
Chromosome and associated proteins [BR:clum03036]
 Eukaryotic type
  Centrosome formation proteins
   Centriole proteins
    117732176 (poc1b)
Cilium and associated proteins [BR:clum03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   117732176 (poc1b)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_SPT8 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_IP5PC_F Beta-prop_NWD2_C RMC1_N PEP5_VPS11_N PROPPIN Beta-prop_Nup120_160 Beta-prop_WDR75_2nd Ribosomal_60s
Other DBs
NCBI-GeneID: 117732176
NCBI-ProteinID: XP_034390804
Ensembl: ENSCLMG00005010837
LinkDB
Position
6:3365925..3393611
AA seq 526 aa
MPAMASVMEDPALERHFKGHKDGVTCADFSPNCKQLASGSLDKSLMVWNLAPKARAFRYV
GHRDVVTGVQFSPSGDLVATSSKDRTVRLWTPSMRGESTVFKAHTAAVRSVAFSHDGQRL
VTASDDKSVKVWSVRRRCFLYSLSQHTNWVRCARFSPDGRLIASCGDDRTVRLWDTSTKH
CVNCFSDCGGSATFVGFNSSGTCIASSGADSSVKIWDLRTNKLLQHYQVHCAGINSFSFH
PSNNYLISGSTDGTVKILDLQEGRLIYTLHGHTGAVNTVTFSRAGDLFASGGADCQVLMW
RTNFDAKSYQDVLQQHGRRSTPDPPPHLTDIHPRGPHLHLPKPTAIQISPTVADTQSRDP
HVVELGRSVHGATPSSGRANSTPTPGGGGGGRHSNGLPTRRMAGSRVGGWVGDESTGGAG
APVRSQTADGGGGRGRREEEEEEEEEEEEEAAARGQTHPLEVLSGHPSCLDSTLRHIVQQ
LDILTQTVSVLEERLTLTEDKLKECLLNQSQILKDVRRSESEETDG
NT seq 1581 nt   +upstreamnt  +downstreamnt
atgcccgctatggcgtccgttatggaggacccggccctggagagacacttcaagggccac
aaagatggcgtcacctgtgcagacttcagtcccaactgcaaacagctggcctcggggtcg
ctggataagagcctgatggtctggaacctggctccgaaggccagggctttccgctacgtg
ggccaccgagacgtcgtcaccggggtgcagttctccccgtccggagacctggtggccact
tcctccaaggaccggacggtccgactgtggaccccctccatgaggggcgagtccacggtg
ttcaaagcccacacggccgccgtgcgcagcgtggcgttctcccacgacggccagcgcctg
gtgacggcgtccgacgacaagtcggtcaaagtgtggagcgtccgccggcggtgcttcctc
tactccctcagccagcacaccaactgggtgcgctgcgccaggttttccccggacgggcgt
ctgatcgcgtcctgcggagacgaccgcaccgtccggctgtgggacacgtccaccaaacac
tgcgtcaactgtttctctgactgcggaggatcagcgacgtttgtcggcttcaactcgagc
ggcacctgcatcgcgtcctcgggagccgacagttccgtgaagatctgggatctacggacc
aacaagctgcttcagcattaccaagtccactgcgcggggatcaacagtttttccttccac
ccgtccaacaactacctgatcagcggctccaccgacggcaccgttaagatcctggacctg
caggagggacggctcatctacaccctgcacgggcacacgggcgctgtcaacacagtcacg
ttttccagggcgggagacctcttcgcctcggggggagccgattgtcaggtgctgatgtgg
aggacaaacttcgacgccaaatcctaccaggacgtcctgcaacagcacggccggaggtcc
accccggaccccccgccccacctgacggacatccaccccagaggaccccacctgcacctc
ccgaagcccacagccatccagatcagtccaacggtggccgacactcagtccagggatccg
cacgtcgtcgagttgggccggtccgtgcacggcgccacgccctcgagcggtcgagcgaac
tcgacgcccacgccgggcggcggcggcggcgggcgccactccaacggattgccgacccgt
cgcatggccggttcaagagtgggaggatgggtgggagacgagagtaccggcggggcaggt
gcgccagtccggagccagacggccgacggcgggggaggaagagggaggagagaggaagag
gaggaggaggaggaggaggaggaggaggaggcggcggcgagagggcagacgcacccattg
gaagttctctccggtcacccatcgtgtctggactcgaccctgcggcacatcgtccaacag
ttggatattctcacgcagacggtttcggtgctggaggagcgtctcaccctgacggaggac
aagctgaaggagtgtctcctcaaccaatcccagattctcaaggacgtgcggaggtcggag
agcgaggagacggatggatga

DBGET integrated database retrieval system