Cyclopterus lumpus (lumpfish): 117732221
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Entry
117732221 CDS
T09199
Name
(RefSeq) DNA-binding protein RFX7
KO
K09175
DNA-binding protein RFX7
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117732221
Transcription factors [BR:
clum03000
]
Eukaryotic type
Other basic domains
RF-X
117732221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFX5_N
RFX_DNA_binding
Pox_D5
Cdc6_C
Motif
Other DBs
NCBI-GeneID:
117732221
NCBI-ProteinID:
XP_034390892
Ensembl:
ENSCLMG00005013116
LinkDB
All DBs
Position
6:9797324..9809523
Genome browser
AA seq
1498 aa
AA seq
DB search
MADDQQQPGQKPASGLGSLPALVPGLQGPEANALQFKIKNSICKSVQSKVDSILQDVEKF
TDIEKLYLYLKLPSGPSSGNDKRTENERGSSTPGLCDQSSMSSSRTQQMYAFNWIRNHLE
EHPETSLPKQEVYDEYKSYCDNLGYNPLSAADFGKIMKNVFPNMKARRLGMRGKSKYCYS
GLRKKAFVHMPSLPNLDLQKSGDGCELMEPSGQSPSAEDEMRSAACGLVCEWAQKVLSRQ
FDHVEDLARFLLNSHYIGTKSMAALTVMTGTPTGMKTPTPASAFVPTAEANSFQPQVKTL
PSPSVDAKQQLQRKIQKKQQEQKLHSPLPSETQVKRTEASTLGPTIACGSPALLSPQPTI
GIVVAAVPSPVTVQRGRQLMTSPSPVGTSEGKVLPVNFQVVTQSLKQSPKHPQNISASPV
SDRLARHGTRYAQILPKPSATSAITLRSPPTLLITNSPIKTVMPTPHVSSVNVVKMTAIA
LAPSSSSSSTTVRPASAGVNTIAALDDLQYTHCGSSFAPQSSAIRPGALISTPILSTDIK
LVCEAGNDNNHAYGTGRTAVGVKEERMAKFRAASEPSFLIKCSPGPDKLSRIKIDPTSPP
ISIAVAGTQDSNSSNCHGSTLYLTVDNQNSYSNTSSNGSSALTPTSKDVCLDIKSPRKRT
GPGGESHVIPVKRVFISQQPLAVIDNPKPGVSAALKRIPRPGTPARPESAPCKVTVKHTS
MGPTQILALSDSPITHNECSQTVVKPQALLMKREDHSLRTDTTAAGNNMPDQALLRQITR
DPLTIPANSGAHEASVMRDLKSTIWEEGQLDELRKQAFAQQRPAEHKQAPSDQLSIIGQP
PEASGQLSLAQEMVDFAGSQPNMDYFPFNDDDMTQDSIVEELVQMEEQMKLKGLFGSCVD
VSIQGQSASSQGSIINAHQAGPTFFHSAHSSTTPVQTPTPTPTPTPTPTPTSEMTLGHSL
TRESPCSRMAPITPVDGPMGRHTPISTPLSNCSSSVPPSPVECRNPFAFTPINSSITGYH
DASIVSSSPVKPMQRPMATHPDKAKLEWINNRYNSNSVGPLPNHSIGILPSYQDLVDDQF
RKPHAFAIPGQSFQAQSRQDASHFGRLTPISPVQQQQQQQQQQQQQPQQQQLVTGVTTPT
KQESFAVPAPLDNKASTSSASSTFRCRSVSPAVRQRNFSGNTNPPTTTNTTTNTTTQAVV
SPFNSPITSEVLSILSNSQAVGSVHSMVQRSQSVPLNIMMQSEMLPLHGQSNTAKITNVL
LSKMEADGDDSVRGLGINNLASNYTARMNLTQILETTPDFAEGTAHQTQLPVSSSPAAFE
LQQHGYLTTSSGEHVSFSTVNSQAQAGPGDQDQQQQQLQENSVQTQPQLLLQSTQQQEAE
DEQQQLDFNNTVKDLLGDDGLNPSSQLVGQVASELNAVASDFSNDIRLTSDLSSSITDLN
TLDTNLLFDPNQQQEQYEDSTLEELKNDPLFQQICSDTVNSFDWLESKDQPTSVEMLG
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgatcaacaacaacctggtcagaagcctgcctcgggattaggctctcttcca
gcgctggtgccaggactccaggggcccgaggcgaacgcgttacagttcaaaataaagaat
tcaatttgcaaatctgtacaatcaaaagtggacagcatattgcaagatgttgagaagttt
acagacatcgaaaaactctacctctacctgaagttgccttctggtcccagcagtggcaat
gataaaaggactgagaatgagagggggtcctccactcctggattatgtgatcagagttcc
atgtcgtcaagccgtactcaacagatgtatgctttcaactggatacggaatcacctagaa
gagcacccagagacttctctcccaaagcaagaggtgtatgatgaatacaagagctattgt
gacaatctcggctacaatccactgagtgcagcagacttcggaaagatcatgaagaatgtc
tttcctaacatgaaggcacgtcgactgggcatgaggggaaaatccaaatattgttatagc
gggttaaggaagaaagcttttgttcacatgccgtccttacccaacctggatctgcagaaa
tctggtgatgggtgtgagctgatggagccgtcaggccagtccccgagcgctgaagatgaa
atgagatctgctgcctgtggactggtgtgcgagtgggcccaaaaggtcctgagtcgtcag
tttgaccatgtggaggacctggcccgcttcctgctcaatagccactacattggcactaag
tccatggctgcactcactgttatgactggaacacccacagggatgaagacgccaactcca
gcctctgcgttcgtgccaacagctgaagcaaactcttttcagccccaggtgaagacactg
ccttctccctctgttgatgcaaagcagcaactgcagcgcaagatccagaagaagcagcag
gagcagaagctccactcacccctgccaagtgagacccaggtcaagagaacggaggccagt
actcttggccccaccatcgcctgtggcagccctgctctgctctcccctcagcccaccata
ggcatcgtggtagcagctgttcccagcccagtcacggtacagcgaggcaggcagttgatg
acctcacccagccctgtggggacttcagaagggaaagtgttgcctgtgaacttccaagtg
gtcactcagtctctgaaacagtcccccaaacatcctcagaatatatcagccagtcctgtg
agtgaccggctggcacgacatggtacacggtacgcacaaattctgcccaagccctctgcc
accagtgccatcacgctgcgctcacctcccaccctgctcatcaccaacagccctataaaa
actgtgatgccaactccccacgtcagctcagtcaacgtggtgaagatgacggccattgct
ctggctcccagcagcagcagcagcagcacaaccgtgcgtcctgcctcggcaggtgtgaat
accatagctgccctggacgatttacagtatacacattgtgggagctcatttgcccctcag
tcttctgcaatccgacccggtgccctaatctccaccccaatcctctccactgacatcaaa
ctggtgtgtgaagctggaaatgacaataaccacgcctatggcacagggagaactgctgtt
ggggtaaaagaggagagaatggctaagttcagggctgccagtgagccaagcttcctgatt
aagtgttctcctggacccgacaagctgtcaagaataaaaattgacccaacatcccctccc
atctcgatagctgtagctgggactcaggacagcaatagcagtaactgccatggcagtact
ttgtacttgactgttgataatcagaactcatatagcaacacatcatccaatggctcctct
gctcttaccccaacatcgaaagatgtctgcctagatatcaagagcccaagaaagcgcaca
ggcccaggtggagagtcccatgtcattcctgtgaaaagggtgtttatttcccagcagcca
ttggctgtaattgacaatcccaaacctggagtcagtgccgcattgaagaggatccccaga
ccgggaacccccgccagaccagagagtgctccctgcaaagtgactgtgaaacacacctcc
atggggcccacacagatccttgctctctctgactcgcctatcacacacaatgagtgctcc
cagactgttgtcaaaccccaggccttgctgatgaaacgcgaagaccattctctcagaact
gatacaaccgcagctggaaacaacatgccggatcaggcattgctaaggcagatcaccagg
gaccctctcaccataccagccaactcaggagcacacgaagcctctgtgatgagagactta
aagagcacaatatgggaggagggacagcttgatgagcttcggaagcaggcgtttgcgcag
cagagaccagcagaacacaaacaagccccttctgaccaactttccattataggtcaacca
cccgaggcctcaggccagctcagcctcgcacaggagatggttgactttgcaggttctcag
cccaacatggactacttcccgttcaatgatgatgacatgacccaggacagtattgtggag
gagctagtgcaaatggaagagcaaatgaagctgaagggtctgtttggtagctgtgtggat
gtgtctatacaaggccagtcagccagcagtcaaggctccatcataaatgctcaccaggct
ggccctactttcttccactctgcccacagcagcaccactcctgtccaaactcccactcca
acaccaactccaactccgacaccaacccccacctctgaaatgacccttgggcacagcctg
acgagagagagcccctgttcccgcatggctccaatcacccctgtggatggacccatgggt
cgccacacccccatcagcacaccactgtccaactgcagcagcagcgtccccccaagccca
gtggagtgcagaaacccttttgcgttcacgccgatcaactcgagcatcacagggtatcat
gatgctagtattgtatccagcagccctgttaagcccatgcaaaggccaatggcaacacat
cctgacaaggccaaactggagtggatcaacaaccgctacaacagcaactctgtaggtcct
ttgcccaaccatagcattggcattctgcccagctaccaagacctggtagatgaccagttt
cgtaagccgcatgcttttgcaattccgggccagtcatttcaagctcagtcgagacaggat
gcgtctcactttggccgtttgacccccatatctccggtgcagcagcagcaacaacaacaa
caacaacaacagcagcagccgcaacagcagcagctggtaacaggtgtaactactcccact
aaacaggagagttttgctgtgcctgcaccgttggacaacaaggcatcaacctcatctgca
tccagcactttccgttgccgcagtgtcagtccggcagtgcgccagagaaacttcagtggc
aacaccaaccctccaacaaccaccaataccaccaccaataccaccacccaagctgtggtt
tcaccctttaactcccccatcacctctgaggtgctcagcatcctgtccaacagtcaggcg
gtcggctctgtgcacagcatggttcagcgtagccaatcggtgcccctgaacatcatgatg
cagagtgagatgctgcctttgcacggtcagagtaacaccgccaaaatcaccaatgttctt
ctcagcaagatggaagctgatggggatgattctgtccgtggcctgggcataaacaacctc
gcctctaactacacggcccgtatgaacctcacacagatcttggagaccactcctgacttt
gctgaaggaactgcccaccagactcaactgcctgttagctctagccctgctgcctttgag
ctccagcagcatggctacctcaccactagcagtggagaacatgtgagtttctccactgtg
aacagccaagcacaagcgggccctggtgaccaagaccagcagcagcagcagctccaggag
aattctgtgcagacacaaccacagctcctcctccagagcacacagcagcaggaggcagag
gacgagcaacagcagcttgatttcaacaacaccgtcaaggacttgttgggggatgatggc
ctcaaccccagttctcagttggtgggtcaggtagcttccgagctcaatgctgtggcatct
gacttttcaaacgacatcaggctgacctcagatctgtccagtagcatcactgaccttaac
acgttggacaccaacctgctgtttgatcctaatcaacagcaggaacaatacgaagactca
acactggaagaactgaagaacgacccgctttttcagcaaatatgcagtgatactgtgaac
tcttttgactggctagaaagcaaagaccagccgacttcagtagagatgctgggctaa
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