Cyclopterus lumpus (lumpfish): 117732259
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Entry
117732259 CDS
T09199
Name
(RefSeq) contactin-1a-like
KO
K06759
contactin 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117732259
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117732259
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
clum00537
]
117732259
Cell adhesion molecules [BR:
clum04515
]
Immunoglobulin superfamily
Contactins
117732259
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
clum00537
]
Others
117732259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
C2-set_2
Ig_4
Pur_ac_phosph_N
Big_3_4
Motif
Other DBs
NCBI-GeneID:
117732259
NCBI-ProteinID:
XP_034390975
Ensembl:
ENSCLMG00005000220
LinkDB
All DBs
Position
6:complement(7997951..8024198)
Genome browser
AA seq
1022 aa
AA seq
DB search
MLHLTLLLHLLVLSLSPADASMHEEVPDFYGEEATGYGPVFEEQPVDTIYPEESPEAKIT
MSCRARANPPATYKWKMDSVEIDLDTQSSHYSLVGGNLVISNPIKTKHVGQYFCFATNIY
GTVISREASVQFGYLDLFSSEERESVYVKEGQGAVLLCAPPPHHPDELSFRWILNEFPTF
IPLDKRRFVSQITGNLYISKVDSSDSGNYSCIASSPSISKSVFSNYIPLVPLAERPIRKY
PADLKVKFPDTTALVGQNITLECFALGNPVPEIRWKKLDGQLPPNHELRMSGAHLHLYNV
QFEDAGSFQCEAVNSRGKDYHAARVSVEAFPEWVEQMSSTEQDLSRDYTMPCVASGKPEP
RIRWLKNGQLSHRKEMRFSSLTFDDSGMYQCIAENHHGVIYATAELRVYACAPTFEHNPV
KRVMAAKNGRVVIECRPKAAPKPSFSWSKDTELLHNHTRVFIWEDGSLEIRNVTRADEGR
YTCFAENDRGKANSTGSLLVTESTKITLAPSNADVKVGENTRMQCAASHDASLDITFVWS
LDGRVIDLHKESHHYERTLNGSSNGELLIKNLQLKHAGRYTCTAQTPIDNVTAAAHLVVR
GPPGAPGGVRVLNKTDKSVTLQWSRGADNHNPISKYTIQYRDSFSEDVWKNATTSPADVE
GNAEMATVVDLFPWIEYEFRVIATSTLGKGEPSSPSPKDKTLEAFPVVAPSDVGGGGGTS
RELTITWTPVQPQYYYGPDFGYIVAFKPQDGAQWMRVTVADPQAKHYIHRDPSIPPMTEY
QVKVKAFNGKGEGPFSLTAAIYSAQDAPSEAPGRVDGKALSATDAIVWWLPLSQGNVDGY
QVKYWRIPDDSEGGAETVVVPGSENHTRLESMKPDSHYLVEVRGYNSAGYGPASEHHQIH
TKKPPPSRAPKIIGQKLKSHSVVNIAWEHVKPLANEAAIEGYKVLYRQKGHSTGTLYTTS
KQYIDLPFHADGNYVVEVRAHSEGGDGAVAQININITGGGVMSAPSLSVLSLLLLAALCL
NL
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacctcaccctgctcctccatctcctggtcctctctctctcccctgcagatgca
tcaatgcacgaggaggtacccgacttttatggagaagaagccacaggttacgggccagtg
tttgaggagcagccggtggatactatctaccccgaagagtcgcccgaggcaaagatcacc
atgagctgccgggcccgggccaatccacctgccacatacaagtggaagatggacagcgtg
gaaattgacttggatacacaaagcagccactacagtttagtgggaggcaacttggtcatt
agcaaccccattaaaaccaagcatgtcggacagtacttctgtttcgctaccaacatctac
ggcacggtcatcagccgagaggcctcagtccagtttggatacctggaccttttctcgtcg
gaggagagggagtcggtgtacgtcaaagagggacagggggcggtgctgctctgcgccccc
ccaccacatcatccagatgagctgtcgttccgatggatcctcaatgaattccccaccttc
atcccactggacaagaggcgttttgtctcccagataacgggtaacctctatatctccaag
gtggactcctccgacagtggcaactactcctgcatcgcgtccagcccgtccatttccaag
agtgttttctccaactacatccccctggtgcctctggctgaacgtcccatcaggaaatac
cctgctgacctcaaagtcaagttcccagataccactgctctggtggggcagaatatcacc
ttggagtgctttgctcttgggaatcctgtccccgagatccgctggaagaagttggacgga
cagcttccccccaatcacgagttgcgtatgtcgggggctcacctgcacctgtacaatgtg
cagtttgaagacgcgggcagcttccagtgtgaggcggtgaactcgagagggaaggactac
cacgccgcacgcgtgtctgtggaagcttttcctgagtgggtggagcagatgagcagcaca
gagcaggacctgagcagggattacacgatgccctgcgtagccagcggcaaacctgaacca
cgcatccgctggctgaaaaatggacaactgtctcacaggaaagagatgaggttcagcagc
ttgacgttcgacgattcagggatgtaccagtgcatcgcagagaatcaccacggagtcata
tatgccactgccgagctgcgcgtgtatgcctgtgctcccacgtttgaacacaaccctgtg
aagagagtcatggcagccaaaaacggccgggtggtgatcgaatgtcgacccaaagcggct
ccaaagccctccttctcctggagcaaagacaccgagctcctccacaaccacaccagggtg
ttcatctgggaggatgggagcctggagatccggaacgtgacacgcgcagatgaaggcagg
tacacctgcttcgccgagaacgaccggggcaaggccaacagcacgggctctctgttggtt
acagagtccacaaagatcaccttggcaccgtccaatgctgatgtgaaagtgggagagaac
accaggatgcagtgcgccgcgtcacatgacgcttccctggacatcaccttcgtctggtcc
ctggatggccgggtcattgacttgcacaaggagagtcaccattacgaacgcaccctgaat
ggaagctcaaacggcgagctactgatcaagaacctccagctgaagcatgctggacgctac
acctgcactgcacagacccccattgacaatgtgacggccgcggcccacctggtcgtcagg
ggtccccccggagccccaggtggggtgcgagtgttgaacaaaactgacaagagtgtaaca
ttgcagtggagccgtggagcagacaaccacaaccccatctccaaatataccatccagtac
agggactccttctcagaggatgtctggaagaacgccacgacatctcccgcggatgtagag
gggaatgcggagatggccacagtggtggatttgttcccctggatagaatacgagttcaga
gtgattgccaccagcactctggggaaaggagagccgagcagcccgtcgcctaaagacaaa
accctggaagcatttcctgtggtggcgccctctgacgtcggtggcggtggaggaacgagc
cgagaactgaccatcacgtggacgcctgtgcagccgcagtactactacgggccggatttt
ggctacatcgtggccttcaaaccacaagatggagcccagtggatgagggtgacagtagcc
gacccccaggccaagcactacatccacagagacccctccattcctccaatgacagagtac
caagtcaaagtcaaggcattcaacggaaaaggagagggacccttcagcctaacggccgcc
atttattctgcacaggacgctccatctgaagctcctgggagggtcgacggcaaagctctc
tctgccacggacgccatcgtgtggtggctgcctctctcacagggcaatgtagatggatac
caggtgaagtactggaggattccggacgacagtgaagggggtgccgagacggtggtggta
cccggcagtgagaaccacaccagactggagagtatgaagccagactctcactaccttgtt
gaggttcggggctacaactccgcaggatacgggccggccagcgaacaccaccagatccac
accaagaagccccctccaagtcgagctcccaaaataattggtcaaaagttaaagagccac
tcagtagtaaatattgcctgggaacacgtgaaaccgcttgctaacgaggcagcaatagaa
ggttataaagtgctgtacaggcagaagggccactccacaggcactctgtacacaaccagc
aagcagtacatagaccttcccttccacgcagatgggaactatgtggtggaggtccgggcg
cactcagaggggggagacggggccgtggcacaaatcaacatcaacatcacaggtggaggt
gtcatgtccgccccgtctctcagcgtactctccctgctcctgttggctgcgctctgcctg
aacctctga
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integrated database retrieval system