Cyclopterus lumpus (lumpfish): 117732268
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Entry
117732268 CDS
T09199
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03420
Nucleotide excision repair
clum04115
p53 signaling pathway
clum04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117732268 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
117732268 (ddb2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
117732268 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117732268 (ddb2)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117732268 (ddb2)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117732268 (ddb2)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
117732268 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WD40
WDR55
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
117732268
NCBI-ProteinID:
XP_034390992
Ensembl:
ENSCLMG00005018579
LinkDB
All DBs
Position
6:complement(10489079..10493360)
Genome browser
AA seq
483 aa
AA seq
DB search
MKTRQTKSAEGAESKAKLRKRTGESSPPDRKDGETSKEAPVKSAAVQKRGGYGSILHYIY
RSTLGQSLHFQMRQCLQEPFVRSLSSYRFHGATSPFNRRITCLEWHPTHPTTLAMGSKGG
DIYLWDFEAPAKKVFLQGNGAGDFIGGMTFCPTDLSQVYVASGEGTLTVQSFEGRTPTVL
SRTQDCGHDHHNVCCWYCCVDVSVSRQMLVTGDNVGQLILLGLDGQKIFSAKLHKAKVTH
AEFNSCCDWLLSTASVDHTVKLWDLRNIKDKKSFLHEMPHERAVNSAYFNPLDCSKLLTT
DQYDQIRVYSSPDWSKPHHIIRHPHRQFQHLTPIKATWHPVYDLIVAGRYPDDRVCTGDQ
RTIDVFDANTAELVCQLQDPSATGIKSINKFNPMGDVIGSGMGVTVLVWNRDKSLNGDQP
EAQEETSTSVDGLGGRQRSRPRSSRDRRAPAVDAKLKKKLASLEELETKTEYTKQKPTRM
RKK
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagacagacgaagtccgcagagggagctgaatcaaaggctaaactcaggaaa
agaaccggggaaagttcaccaccggacagaaaagatggagaaacatccaaagaagctcct
gttaagtccgcagcagttcagaagagaggagggtacgggagcatcctgcactacatttac
aggagcactctgggtcaaagtcttcacttccagatgagacagtgtctgcaggaacctttc
gttcggtcgctgtcgtcctatcgtttccacggcgctaccagccccttcaaccggagaatc
acctgtctggagtggcaccccactcatcccaccaccctggctatgggctctaagggaggt
gacatctatctgtgggattttgaggcacctgcaaaaaaagtattccttcaagggaacgga
gcaggggactttatcggagggatgacattttgcccaacggacctttcccaagtctatgtg
gcttctggtgagggcacgttgactgtgcagagctttgagggccgcacgcccaccgtcctg
tccagaactcaagactgtggccacgatcaccacaatgtttgttgctggtactgctgtgtg
gacgtgtctgtaagtcgacagatgcttgtgacaggagacaatgtgggacagcttatcctc
ctgggtttggatggtcaaaagattttcagtgccaagttgcacaaagccaaagtgacccat
gccgagttcaactcctgctgtgattggttgttgtcaacggcctcagtggaccacacagtg
aaactttgggacctgagaaacatcaaagacaagaagagcttcctccacgagatgcctcat
gagagagctgtcaactcggcctatttcaacccactggactgctccaagttgctcaccacg
gatcagtacgaccagatccgggtctactcctctcctgattggtcaaaacctcatcatatc
atccgacatccacatagacagttccagcatctcacacccatcaaggccacttggcaccct
gtctatgacctcatcgtggcgggccgttacccggatgaccgggtttgcactggagatcag
aggaccatcgacgtctttgatgccaacacggctgagcttgtgtgtcagctgcaagatccc
agtgctacaggaatcaaatctatcaacaaattcaatccaatgggtgacgtgattggatct
ggaatgggtgtgacggtgctggtgtggaatagagacaagtcattgaacggtgatcagccc
gaagcgcaggaggaaacctcaacctcggtggatggtttaggaggccggcagaggagtcgg
ccgcgctccagcagggacaggagagctcctgctgtggatgcaaagctcaagaagaaactg
gcttctctggaagaattggagaccaagactgagtacaccaaacaaaaaccaacgcggatg
aggaaaaagtaa
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