Cyclopterus lumpus (lumpfish): 117732296
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Entry
117732296 CDS
T09199
Symbol
prdm11
Name
(RefSeq) zinc finger protein 862
KO
K24644
PR domain zinc finger protein 11 [EC:2.1.1.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117732296 (prdm11)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117732296 (prdm11)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
SET
FOG1-like_PR
Zn_ribbon_PRDM4
Dimer_Tnp_hAT
Motif
Other DBs
NCBI-GeneID:
117732296
NCBI-ProteinID:
XP_034391049
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All DBs
Position
6:955334..973411
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AA seq
1068 aa
AA seq
DB search
MSELSLDLWFCEECRDYFQKECPSHGPPLFVPDTPAAPGSANRAALTVPSGLEVFTEGDR
VDVRCLDSNIPKGAVFGPYEGELVSKDKSSGFFSWIVVDFNNAYQSIDGSDETKANWMRF
VRTSSEESDRNLTAFQRGRNIFFRVSRALEAGEKLRVWYSDDYIQRLHCVSQDSIDRNLE
TDTKKLALFNIQEDFKPPCLQSVLQGKANAGKLSSEEPDGQPPAKRKKIDLIFKDVLEAS
LEDSGKSRSQSSLHGECKAAVLGLNSSDGGFNVPNLKVEENQSGEKSSTSFCPNCIILKR
RIQELEEELSRARGEKGGVAGPPMSGRTLTQRDQAPPHPEQGPVEDFQVMEPLTPTQVVL
DEDDPDVDSADESIAADLVISPEESLKLSTAGGRRIRRFKQEWLKKFWFLRYSATLNEMW
CHVCRQYTVQSSRTSAFIIGSKQFKIHTIKLHSQSNLHKKCLQLYKLRMHPEKTEDMCKN
MTLLFNAAYHLALEGRPFSDLRPLAELLKRCELKVVDQYMNDGDCQILLHHIARALKEDL
AEKMRLSPFLSVIMDAQNDDLFSDMVAVYVQFITNEGSPNTEFLSLQRLSVASVDGYLQA
MDRAFGVLGLRFQDLLVVGLGVDGTNISSGMRANLYIAVEKTFPWILCLPIMIHRPHLEV
LDAISGKELSCLEDLENNLKQLLSFYRYSPRMMAELRSTAPTLSEETEFLGDIKAIRWII
GEPNVLNALIKDYLEVVAHLKEISSQTQRADAAAIALTLLQFLMDYQSVKLIYFLLDIIA
VLSRLAFTFQGVYLLVSQVEAKIEEAILEIGQLVDCPGEYLQEFEENFRESFNGIALKNL
LVAESKFQSIREKICNRSQGILSQRLDLQSRTFAKACKVLDLSTWPQTREDLQAYGEEEI
QVIFNHLDSIPCGGQEGSHARTEARGSLVVEWKDLKADYYSMNGFKEVIGHICRYKQRFP
LLNRIMQVVRVLPSSTACCDKGRGSLQKMCRNNRSRLTLEQMNDLLAVAVNGPPMANFDG
KRALDSWFEEKSGSSYTLSTEAVTKMSGGDQKSVLHSVDVNTEFYPDA
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagctgtcattggacctctggttctgtgaggagtgccgagactacttccagaag
gagtgtccgtcccacgggcccccgctgttcgtccccgatacgcctgcggccccggggtcg
gccaacagggcggcgctcaccgtcccgtcgggcctagaggtcttcaccgagggggaccgc
gtggatgttcgctgcctggattcaaacatccccaagggggcggtcttcggtccatacgag
ggagagctggtgtccaaggacaaatcctctggcttcttttcctggatagttgttgatttt
aacaacgcgtatcagtccatcgatggcagcgatgagaccaaagccaactggatgaggttt
gtccggacctcatcggaggagagcgacaggaacctgacggcttttcaacgcggtagaaac
atcttcttcagagtgagccgggcgctggaggccggagagaagctcagggtttggtacagc
gacgactacatccagcgcctccactgtgtctcacaggacagcatcgaccgcaacctggag
acagataccaagaagctggcgctcttcaacattcaggaggactttaaacctccctgcctg
cagtcggttctgcagggcaaagccaacgccggcaagctatccagcgaagagccagatggc
cagcctcctgccaagaggaagaagatcgacctcatcttcaaagatgtcttggaggcttcg
ctagaggactccggcaagtccaggtcccagtcttccctccacggtgagtgcaaagcagcg
gttctcgggttgaactcatccgacggcggctttaacgtaccaaacctgaaggtggaggag
aaccagagcggcgagaaatcctccacctccttctgccccaactgtattattctgaagagg
aggatccaggagctggaggaggagctgtcccgtgccagaggagaaaaggggggcgtggcc
ggtccaccaatgtctggacggaccctgacccaaagagatcaggccccgccccatcctgag
caaggccccgttgaggattttcaagtgatggagcccttgacgccaactcaggtggttctg
gatgaagacgacccggacgtggactcggctgatgagtccattgctgcagatcttgtcatt
tctccagaagaatcattgaagctttccaccgcaggaggccgacggattcgtcgcttcaag
caggagtggctgaaaaaattctggttccttcgctactcggcgactctcaatgagatgtgg
tgccacgtctgccgccagtacaccgtccagtcatcccgaacctctgcctttatcatcggc
tccaagcagtttaagatccacaccatcaagctccacagccagagcaacctccacaagaag
tgtctgcagctgtataagctgcgcatgcatccagaaaagacagaagacatgtgcaagaac
atgacgctgctgttcaacgcggcgtaccacttggccctggagggacggcccttctctgac
ctccgtcctctggcagagcttctgaagaggtgcgagctcaaagtggtggatcagtacatg
aatgacggggactgtcagatcctcctccaccacatcgcccgggctttgaaagaagacctg
gctgagaagatgcgcctgtctccctttctaagtgtcataatggatgcccaaaatgacgac
ctgttctcagacatggtcgcagtctacgtacagttcattaccaatgagggctccccgaac
acagagttcctgtccttgcagagactgagtgtggccagtgtggacggatatctccaggct
atggatcgagcctttggtgtcctaggcctcaggttccaggacttgctggtggtgggtctg
ggggtagacggcaccaacatctcctcaggaatgagagccaacctgtacatagctgtcgaa
aagacctttccttggatcctctgcctccctatcatgatccatcggccccatctggaggtg
ctggatgccatcagtgggaaggagctctcctgcctggaggatctggaaaacaacctcaag
caactcctaagtttctaccgctactcccctcgcatgatggccgagctgcgatccactgct
ccgaccctgtcggaggagacagaattccttggagacattaaggccattcgatggatcata
ggagaaccaaacgtcctcaacgcgctcatcaaagattacctggaggtagtcgcccatctg
aaggagatcagcagccagacgcagagggctgacgcggcagccatcgctcttaccctcctc
cagttcctcatggactatcagtcagtaaagctcatctatttcctcctggacatcatagct
gttctctcacgattagcctttaccttccagggagtgtacctgctggtgtcacaggtggaa
gccaagatagaggaggccattttggagattggtcagttggtggactgccccggagagtat
ctgcaggaatttgaggagaatttccgcgaaagttttaacggcattgctctgaagaacctg
ctagttgcagagtctaagtttcagtccatcagggaaaagatctgcaacaggagccagggc
attctgtctcagaggctggacctgcagagccgcacatttgccaaagcctgcaaggtcctg
gacctgtcgacctggccccaaacccgtgaggacctacaagcttacggggaggaggaaatc
caggtgatattcaaccatctggactccataccctgtgggggtcaggagggctcccatgcc
aggacggaggccaggggcagcctggtggtggaatggaaggatctgaaagcagactactac
agtatgaacgggtttaaagaggtcatcggtcacatctgcaggtacaagcagcgctttcct
ttgctgaatcggatcatgcaggttgtcagggtcctgcccagttccacagcctgctgcgat
aaaggccgagggtctctgcagaagatgtgtcggaacaatcgctcacggctgactctggag
cagatgaacgacctgctggccgtggcggttaacggacctcccatggccaactttgacggt
aagcgagcgctggacagctggtttgaggagaagtctggcagcagttacactctgtccacc
gaggcggtgaccaagatgtcaggtggtgaccaaaagtctgtcctgcacagcgtggacgtc
aacacggagttctaccctgacgcctaa
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