Cyclopterus lumpus (lumpfish): 117732455
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Entry
117732455 CDS
T09199
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
117732455 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117732455 (myo5c)
04131 Membrane trafficking [BR:
clum04131
]
117732455 (myo5c)
03029 Mitochondrial biogenesis [BR:
clum03029
]
117732455 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
clum04812
]
117732455 (myo5c)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
117732455 (myo5c)
mRNA cycle factors
P-body specific factors
117732455 (myo5c)
Membrane trafficking [BR:
clum04131
]
Others
Actin-binding proteins
Myosins
117732455 (myo5c)
Mitochondrial biogenesis [BR:
clum03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
117732455 (myo5c)
Cytoskeleton proteins [BR:
clum04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
117732455 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_16
Myosin_N
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
117732455
NCBI-ProteinID:
XP_034391296
Ensembl:
ENSCLMG00005015966
LinkDB
All DBs
Position
6:9850640..9860444
Genome browser
AA seq
1742 aa
AA seq
DB search
MALLELYTEYNRVWIPDAEHVWKSAEIMRDYHSGDNVLRLLLEDGTEHHLPVDPSKPQLP
PFRNPDILVGENDLTALSYLHEPAVLHNLKVRFAESKIIYTYCGIILVAVNPYKQLHVYG
DAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNHKNQSIIVSGESGAGKTVSARYAMRYF
AVVSKSGSKTHVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDRRYRIIGANMR
TYLLEKSRVVFQTDNERNYHIFYQMCSCAHLPQFKSLSLLSADKFQYTCKGGDISIEGVD
DKKDMEETRKTFSLLGLKEDFQSDVFKVLAAILHLGNVNIRNSGAGKSSVPPSDPHLAFF
CELLSVSAEGLGRWLCHRRLVLLAETVVKPLPIERAVNARDALAKQIYAHLFDCIIKRIN
SALQVPGQQHAFIGVLDIYGFETFDINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMRE
DIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDQSWLQKLFNYLDSSPLFEKP
RLSNEAFVIQHFADKVEYQCTGFLEKNRDTLYEELVDIMRVSKFPFLANFFREQKQSSVT
RKGVQVRPARPAVKPANKQLRTSVGDKFCSSLSLLMETLNATTPHYVRCIKPNDEKLPFE
YDSRRVVQQLRACGVLETIRISAQSYPSRWTYNEFYSRYSILMSHQEADLNDKKQTCKDV
LQRLIQDPNQYKFGRTKIFFRAGQVAYLEKLRLDRLRGACVTIQKHVRGWSQRRKYLRMR
EAAIILQQYIRGKRTIRKTVTAAKLKQGWAALVIQKYWRGYRMTQIFQVVRLASITIQAY
TRGWRARKRYKKMMEEQKALILQKYTRAWLARRRFQTMRRLVLNVQLSYRVQQLRKKVEE
QNKENRGLMERLSSLANFHSQTIDRLQGLEAKLAKSTSQQASVEAREKKTKEDASLTTAQ
LQKEIDALNLEKQNLKNRFEASTKEAKECFDQITGNILEEKEYEIRIRKIAENNAEIQRQ
DYENEVETLKVEIKRLKEERISLQRKLEEAGQLNSDLQEQVIQLTKHVKVIPELRRDLNN
LQNQRNNMDRKMKQQSELAIAKMNDITRQLLGGVVEEQVLLGLSPDHSKIYEIEDLLTAF
EGLQKATRILEKRQKEQKESYETHVEGLKLKGDHLQNENSKLQNLFREKSNVNENIRQEV
SRLSSENSVIPELKLQASELQRQKQELEAHIEMQSRELAEKTEEITNNLQKKIQEESSQR
RHLEANVEELEELKRELQRRVEELEDETAHLKRQQQMESEAKNKLRQETSQLTAENMDLE
EQLDQKDRIIKKLLNHVKSLEASQKAKQTPAPAIPKDFLGMLEYRREDESRLIQNIILDL
KPKGVVVNVIPGLPAYILFMCVRHADYLNDEVRLKSLMNAIIGAVKQVIVSNNKNFELLS
FWLSNMYQLLNCLKQYSGEEEFLKQNTPRQKKNCLQNFDLSEHRQILSDLAIQIYHQFVS
IIEDTLIPAIVPGLLEHESLQGISSMKPTGFRKRSNSIYEDSETHTISSIVQQLSVFHST
MSQHGMEQGLINQAVKQMFFLVGATTLNNIMLRKDMCSCRKGMQIRCNISYLEEWLKDKE
LQSSNSIDTLMPLSQAAWLLQVNKSTDDDAKEITEKCTELNSVQIVKILNSYTPIDDFEK
RVTSSFVRKVQSLLQDRDGSSSQLMLDSDYRFQVTFPFCPSSQALELLQVPSSLHLSFLT
RI
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggctctgttggaactgtacaccgagtacaacagagtgtggataccagatgcagaacat
gtatggaaatcagccgagattatgagagactatcattctggggataatgttctcagattg
cttcttgaagatggcactgagcaccacctccctgttgacccgtcaaaaccacaactccct
ccatttcgcaacccggacatcttggtgggggagaacgacctcaccgctctcagctacctg
cacgaacccgcagtccttcataatcttaaagtgcgatttgcggagtccaaaatcatctac
acctactgtggtattatactggtggctgtaaatccatacaaacagcttcacgtctatgga
gatgcaatcattcatgcctactcgggccagaacatgggagacatggaccctcatatattt
gcagtagcagaggaggcttacaaacagatggccagaaaccacaaaaaccagtctatcatc
gtcagtggtgaatctggagctgggaaaacagtgtctgctcgatacgccatgaggtacttt
gctgtcgtgagcaaatctggaagtaagactcacgttgaagacaaagtcctggcatccaat
ccgataacagaggcaataggaaacgcaaagaccacccggaacgacaacagcagccgtttt
gggaaatacacagagatcagctttgacaggaggtaccggatcatcggagcgaacatgagg
acctatctcttagagaaatctagagtcgtctttcagacagacaacgagcgaaactatcac
atattctaccagatgtgttcctgtgctcacctgccacagttcaagagtctaagcctgctg
agtgcggataagttccagtacacctgtaagggcggtgatatcagcattgaaggtgtcgat
gacaagaaagacatggaggagactcgaaagaccttctcactgctggggttgaaggaggac
tttcagtcagatgtgttcaaagttttagcggcaattttgcacttgggaaatgtcaacatc
agaaactctggagctggaaaatcatcagttcctcccagtgatccacacctggcgttcttc
tgtgagttgctgagcgtgagtgcagaagggttggggcgttggctgtgccatcggaggctc
gttctgctggctgagacggtggtgaagccgttgcccatagagcgggctgtgaatgccaga
gatgccctcgccaagcagatctatgcccatctgtttgactgtattatcaagaggataaat
agtgccctgcaggttccaggacagcaacatgctttcattggtgtacttgacatttatggc
tttgaaacgtttgacatcaacagctttgagcagttttgtatcaactatgcaaacgagaag
cttcaacagcagtttaacttgcacgtgttcaagctggagcaagaggagtacatgagagag
gacataccgtggacgttgattgatttctatgacaaccagccagtcattgacctgattgaa
gccaagatggggatcctggacttgcttgatgaagaatgtttgtttcctcagggaactgac
caaagctggctgcaaaagctgttcaactaccttgattccagtcctctgtttgagaagccc
aggttatcaaatgaggcatttgttattcaacactttgcagacaaggtggaatatcaatgt
acaggttttcttgaaaagaacagagacactctgtacgaagaactggttgacattatgaga
gtcagtaagtttccttttctggccaactttttccgagagcagaagcaaagctctgtgaca
aggaaaggtgtccaagtgagacctgccagacctgcagtgaaaccagccaataaacagttg
agaacctctgtgggagataagttctgcagctccctctctttactgatggaaacactgaat
gctaccacccctcactatgtgcgctgcattaagcccaatgatgaaaagctcccatttgaa
tatgactccaggagggtggtgcagcagttgcgagcgtgtggagtccttgaaactattcgt
atcagtgcacagagctatccgtccaggtggacctacaatgagttttatagtcggtacagt
atcctgatgtcacatcaggaggcggacctcaatgacaagaaacagacttgcaaggacgtg
ttgcagaggttgattcaggaccccaaccagtacaagtttggtcggacaaagatcttcttc
cgagctggtcaggtagcttatctcgagaagctgcgcctggaccgacttagaggagcctgc
gtgaccatccagaaacacgtccgcgggtggagccagaggaggaagtacctgcgcatgaga
gaggcagccatcatcctccagcagtacatccgtggaaagaggacaatccgtaaaaccgtg
actgctgcaaaactaaagcagggctgggcagcactggtgatccagaaatactggagaggt
taccgcatgacacagatcttccaggtcgtccgtctggcttccatcaccatccaggcctac
acgcgaggttggagggcccgtaaacggtacaagaagatgatggaggagcagaaagccctc
attctacagaagtataccagggcatggctggcaagacggcgttttcaaaccatgcgtcgg
ctggtgctcaatgttcagctctcctacagggttcagcagctcagaaagaaggttgaagag
cagaacaaagagaaccgtggattgatggaaagactttcaagcttggccaacttccactct
caaaccatagacaggcttcagggtctggaggcaaagctggcaaaatcaaccagccagcag
gcgtctgtggaggcaagagagaagaaaaccaaagaagatgcaagtctgacaactgcacag
cttcagaaggaaatagatgcactaaaccttgaaaagcagaacttgaagaacaggtttgaa
gctagcaccaaagaggctaaagagtgctttgatcaaataacggggaacatcctggaagag
aaagaatatgaaataaggattagaaaaattgcagagaacaacgctgagatccagagacag
gactatgagaatgaagtggaaactctgaaagtggagattaagagattgaaagaagagaga
atcagtctgcagagaaagttggaggaggcgggccagttgaactctgacctgcaggaacag
gtcatccagctcaccaaacacgtcaaggtcattcccgagctccgcagagatctcaacaac
ctgcaaaaccagaggaacaacatggaccgaaagatgaagcaacagtcggaactagcaata
gctaaaatgaacgatattacgagacaactgcttggtggtgttgttgaggagcaggttctt
ttggggctatctccagaccactcaaagatttatgaaattgaagatttgctgacagccttt
gagggcctacagaaagcgaccagaatactagaaaaacgccagaaggagcagaaggaaagc
tatgagacacacgtggagggcttgaaattgaagggggaccaccttcaaaatgagaacagc
aagttgcaaaacctgttccgggagaaaagtaatgtcaacgaaaatattcgccaagaagtg
tccaggctcagcagcgagaactcagttataccggagctgaagctgcaggcttcagagctg
cagagacaaaaacaagaattggaggcccacatagagatgcagagcagagaactcgcagaa
aaaactgaggagatcacaaacaatcttcaaaagaagattcaagaagagagctcccaacgc
aggcaccttgaggcaaacgttgaagagctggaggagttgaagagggagcttcaacgcaga
gtagaggagctggaagacgagactgctcatttgaagagacagcagcagatggagagtgaa
gctaagaacaaactgagacaggagacttcacagttaactgctgagaatatggatttagaa
gagcagctggaccagaaagacagaataataaagaaactcttgaatcacgtaaagagcctc
gaagcatcacagaaagccaagcaaacacctgcacctgcaattcccaaagatttccttggc
atgttggagtacaggagagaggatgaatccaggctcattcaaaacataattctggacctg
aagcccaaaggtgtggtggtcaatgtgatccccggtctgccagcttacatcctcttcatg
tgcgtccgccacgctgactacttgaacgatgaagtcagactcaagtctcttatgaatgcg
atcatcggtgctgtcaaacaagtcatcgtgagtaacaacaaaaactttgagttgctgtca
ttctggctctcaaacatgtatcagctgctcaactgtctgaaacagtacagcggggaggag
gagttcctgaaacaaaatactcctcgacagaaaaagaactgcttgcagaattttgatttg
tctgaacacagacagattctcagcgacctggccattcaaatctaccatcagtttgtctcc
atcattgaagacaccctaattcctgcaattgtgccaggtttgttggagcacgagagctta
caggggatttctagcatgaagccgacgggcttcaggaagcgctccaacagcatctacgag
gactcggagacgcacaccatctcctccatcgttcagcagctcagtgtcttccactccacc
atgagccagcatggcatggagcagggactcatcaaccaggcagtcaagcaaatgttcttc
ctcgttggtgcgaccaccctcaacaacatcatgctccgcaaagacatgtgttcctgcagg
aagggaatgcaaatcaggtgtaacatcagttaccttgaggaatggctaaaagacaaggaa
ctgcaaagctctaattctatagacactctgatgccgttgtctcaggccgcctggctactg
caagtcaacaagtccactgacgacgacgccaaggagatcactgaaaaatgcactgagctc
aactcggttcagattgtcaagattttgaactcctacactcccattgatgattttgagaaa
agggtgacgtcatcatttgttcgcaaagttcagtcattactacaagatcgtgacgggtcc
agctctcagctgatgctggactcagactatcgtttccaggtcacgtttcctttctgcccg
tcctcgcaggctctggagctgctgcaggtcccgagcagccttcacctgagcttcctaacc
aggatctga
DBGET
integrated database retrieval system
