Cyclopterus lumpus (lumpfish): 117732568
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Entry
117732568 CDS
T09199
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117732568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117732568
03036 Chromosome and associated proteins [BR:
clum03036
]
117732568
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117732568
Coactivators
SAGA/TFTC/STAGA complex
117732568
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117732568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
117732568
NCBI-ProteinID:
XP_034391477
LinkDB
All DBs
Position
6:complement(436009..469246)
Genome browser
AA seq
909 aa
AA seq
DB search
MAGASDPLEDMLFTEVDEKAVSDLVGSLESQLGDRKASAGNRDGTPPAAGQLSGKARDRA
GSPEPQQGHPGAGLDPEPGADEPLSGRVLPSSGSGVPAGAGPLTAGAPPATNSSVLGPVT
LTTRSAAASFHLAPGPVTEAVRTATPGLQSLNGGAGAVKLVNSVPAAAPGTGTVISTGVS
TVAAPAGHLQRHPSTVAQNGVDPKGAPPSPQVVNHSTPLMHPKVLVPSQPQVILTSTPPA
AAAQPHVGQTGASTAAVTLKPAVNGVGQPPMAVMRPPGAPLVTASIQQQRPGLVASAPRA
AAPQPPLAVRPQQQTTIQLPPGFSMPPGMVLVRTETGQLVMVPQQVLAQAQAKTQQGQAV
ANISQRPATPTAGTTIRVSAATAPQTVRLASPAQTRMVQPPSTTTVQKTITVSPGGAAVS
VKMLPPQKAQTVITAGGVPVSKPVGVPSTPPSMPAARVSVVSQEMQENVKKCKNFLATLI
KLASHNSPSPDTSKNVKALVQDLLDAKIEPEEFTSRLQAELKSSPQPYLIPFLKKSLPAL
RQSLLSNQQSLVTPGTSAPIPMTPPPMAPGSIAAIRPRLPISPAGVRLNTPITNAMAVGR
AAVQSRTPAVFSQTLRPQGTLVRGPTTIINKSPLNLAAQANQRKLSDPGGGTFRDDDDIN
DVASMAGVNLNEENARILATSSELVGTKIRSCKDEAFLPTGLLHRRILDTAKKLGVMEVP
LEVVNLVSHATQSRLRSLLETVSSVAQHRADGGKDEEHHDHTSDVRSQLRFFEHLERMEK
QRKDEQEREILLKAAKSRARQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPR
RKRRQDSPGGSTSGPEVASGSGSGSSPVSSSRQQLRQRITRVNLRDFIFCLEQDRSTARS
MMLYKALLK
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccgctggaggacatgctcttcaccgaggtggacgagaaggcg
gtcagcgacctggtgggctctctggagtcgcagctcggagacaggaaagcttccgccggt
aaccgggacggaacgccgccggccgccgggcagctctccgggaaagcgcgcgaccgagcg
gggtctccggagccgcaacaagggcaccccggagcgggtttagacccggaacccggagcg
gacgagccgctctccggaagagtcctcccgtcctccgggtccggggtccccgccggagcc
ggtcccctgacagcgggagccccccccgccactaactcctcggtactgggacccgtaact
ttgaccacccggtccgccgcagccagctttcacctggctccgggtcccgtcacagaggcg
gtccggaccgctactcccggactacaaagtttgaacggcggcgctggagccgtaaagttg
gtgaactctgtgcctgcggcggctccggggaccggcacggtaataagcaccggggtctcc
acggtggcggctccggccggccacctgcagagacaccccagtacagtggcccagaacgga
gttgaccccaagggtgccccccccagcccacaggtggtgaaccacagcacccctctgatg
caccccaaggtgctggtgccgagccagccccaagtcatcctgaccagcacccccccggcc
gctgcagcccagccacacgtcggccaaaccggggccagtacggctgccgtgaccctgaag
ccagcggtgaacggcgtgggtcagccccccatggccgtgatgaggcccccgggggccccc
ctggtgaccgcatccatccagcagcagagacccggacttgtggcgagcgccccccgagcg
gcggctcctcagccccccctggccgtccggccccagcagcagaccaccatccagctgccc
cccggattctccatgcctccaggtatggttctggtccggactgagacgggtcagctggtg
atggtccctcagcaggttctggctcaggctcaggccaagacccaacagggtcaagcggtg
gccaacatcagccagaggcccgccacaccgaccgccgggaccaccatccgggtcagcgcc
gccacggctcctcagacggttcgcctggcgtcccccgctcagaccagaatggttcagcct
ccatccaccacgaccgtacagaagaccatcacggtgtcccccggtggagcggcggtgtct
gtgaagatgctcccccctcagaaggcccagacggtgatcacggcggggggggtgccggtg
tcaaagcccgtcggagtaccgtccacccccccctccatgccggctgccagagtctctgtg
gtgtcccaggagatgcaggaaaatgtgaagaagtgtaagaacttcctggcgacgctcatc
aagctggcgtctcacaactccccctcccccgacacctcgaagaatgtgaaggccctggtg
caggacctgctcgatgcaaagattgaacctgaggagttcaccagtcgtctgcaggctgag
ctgaagtcctctccacagccctacctcatccccttcctcaagaaaagcctccccgctctg
cgtcagtctctgctcagcaaccagcagtctctggtgacccctggtacctcggccccaatc
ccaatgacccctcccccgatggcccccggctccatcgccgccatcaggccgcggctgcct
atcagtccagctggcgtcagactgaacacgccgatcaccaacgccatggcggtgggccga
gcagcagtccagagtcgaacacctgctgtcttcagccagaccctcagacctcaaggaaca
cttgtcagaggacccacaactataatcaataaaagtcctttgaacttggcagcgcaagcc
aatcagaggaagctgagcgacccggggggcgggacattcagagatgacgacgacatcaac
gacgtggcgtccatggccggagtcaacctcaacgaggaaaacgcccgcatcctcgccacc
agctcggagctcgtgggcacgaagatccgctcctgtaaagacgaagccttcctgcccacc
ggcctgctgcaccgccgcatcctggacacagctaagaagctgggggtgatggaggttcct
ctggaggtggtgaacctggtgtctcatgccactcagtccagactgcgctctctgctggag
acggtctcgtctgtcgctcagcaccgagcagacggagggaaggatgaagagcaccatgat
catacgtcagacgttcgctctcagcttcgtttctttgagcatctggagcgcatggagaaa
caaaggaaggacgagcaggagagagagatcctgctgaaggctgccaagagtcgagccaga
caagaagatcctgaacaagctcgtctgaagcagaaagctaaagagatgcagcagcaggag
ttggctcagatgagacaacgagacgccaacctcacagcgctcgccgccattgggccacgc
aggaaacgccggcaggactcaccgggagggtcgacgtctggacccgaggtggcctcgggc
tcgggttccggctcctcccctgtctcctcctcacgccagcagctccgtcagcggatcaca
cgagtcaacctcagggacttcatcttctgcctggagcaggaccgctccacggctcgctct
atgatgctctacaaggccctgctgaaatga
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