Cyclopterus lumpus (lumpfish): 117732615
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Entry
117732615 CDS
T09199
Symbol
rfwd3
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3 isoform X1
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117732615 (rfwd3)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117732615 (rfwd3)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117732615 (rfwd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
Beta-prop_WDR5
zf-RING_2
Beta-prop_THOC3
zf-RING_UBOX
zf-C3HC4
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_WDR3_1st
Rtf2
zf-rbx1
zf-C3HC4_2
Beta-prop_EML_2
zf-RING_5
zf-ANAPC11
WD40_Prp19
zf-RING_11
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
WD40_2
zf-C3HC4_4
WD40_WDHD1_1st
Beta-prop_RIG_2nd
zf-RING_Vps41
CFAP43_N
Beta-prop_EIPR1
NSRP1_N
Beta-prop_WDR36-Utp21_2nd
Motif
Other DBs
NCBI-GeneID:
117732615
NCBI-ProteinID:
XP_034391550
Ensembl:
ENSCLMG00005007893
LinkDB
All DBs
Position
6:complement(2009324..2021567)
Genome browser
AA seq
718 aa
AA seq
DB search
MEAMEVDFPGVMLGAGGGSRRSRQRAINIAADLAGSDAAAPQDISDSSGTEVDEDNEAEW
TAPSAPPRLPATWAFSHWAVGGSAAAPSAAQGARIRRRLRQGLRVHYPSQTAAPSRGFPD
FLLRAPAASVAEPESGSTTEVSESEDDEEGPAAAPGPVDPAPPPPAGPRLNSQPQEAGSR
NSGSAADVERPEAPSQNVQPAPVATPLMATPPTAPAPMQPSQSEEGEGDVCSICFEAWTT
AGEHRLSALRCGHLFGFTCIRRWVSAQGPSAKCPQCNKKAKRSDIVLLYAPKLRALDNSE
QEILKKSLEQEQSLRRKAELESAQYKLKLQVVTNKYGQAQQELQELRALMSQGGRSSLSS
SASGSLLLGPSQRSRAAQYVFSKAVLVSQAGGSRVLSYCEPLSCLLASQPSPQAALVPGC
GVKKVSVVNMKASQYVPIHNKQIRGLSFNRQNDSLLLSAALDNTIKLTSLLTNTVVQTYN
AGKPVWSCCWCLDNCNYVYAGLSNGSVLVYDTRDTSTHVQELQPLRSRCPVASLCYIPRA
ASSSFPCGGLIASSLEGGCFWEQVNETTYRPHALPLETTGCTDIQVETETRHCLVTYRPG
RSNPSLRCVLMALTRTPQQDSAQLPSCSCSPVQTFGAGSSCKLLTKNAVFRSPDGGGTLV
CAGDEASNSTLVWDAASGSLLQKLPADLPVLDISPFSLNGEHFLASLTEKMLKLYRWE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatggaggtggacttcccgggggtgatgctgggcgcaggaggaggcagccgg
cgcagccgacagcgcgccattaacatcgcggccgatttagccggatcggacgccgccgcg
ccgcaagacatctcggactccagcggcaccgaggtggacgaggacaacgaggcggaatgg
acggcgccgagcgcgccgcccagacttcctgccacctgggcgttcagccattgggcggtg
ggcgggtcggcggccgcaccgtcggccgctcagggggcgcgaatacggaggaggctcagg
cagggcctcagggtgcactaccccagccagacggcagcgccctccagaggctttccagac
ttcctgctccgggcaccggccgccagcgtggccgagccagagtccggcagcaccaccgag
gtcagcgagtctgaggatgacgaggaaggcccggccgccgctccggggcccgtcgacccg
gcgccgccgccgcccgccggtcctcgcctcaactcgcaaccgcaggaagccggctcgcgc
aactccggttcagctgcagacgtcgagcggccagaagctccaagtcagaacgtccagccg
gcccccgtggccacgccccttatggccacgccccccacggccccggcgcccatgcagccg
tcgcagtcggaagagggcgaaggcgacgtctgctccatctgcttcgaggcgtggacgacg
gcgggcgagcaccggctgtccgccctgcgctgcggacacctcttcggcttcacctgcatc
cgccgctgggtgtccgctcagggcccgtccgccaagtgtccgcagtgcaacaagaaggcg
aagcgctccgacatcgttctgctgtacgctcccaagctgagagcgctcgacaactccgag
caggagatcctcaagaagtctctggagcaggagcagtctctgaggcggaaggctgaactg
gaatcagctcagtacaaactgaaactgcaggtcgtcaccaacaaatacggacaagcacaa
caagagctgcaggagctgagggccctgatgtcgcagggcggccggagctcgctctcctcc
tcggcgtcgggctcgctgctcctcggcccgtcccagcgctccagggcggcccagtacgtc
ttctccaaggcggtgctggtgtcccaggccggaggctccagggtcctgtcctactgcgag
ccgctgagctgcctgctggcctcgcagccgtcgcctcaggccgccctggttcccggttgt
ggcgtgaagaaggtgagcgtggtcaacatgaaggcgagtcagtacgtccccatccacaac
aaacagatccgaggtctgtccttcaacaggcagaacgacagcctgctgctgtcggctgct
ctggacaacaccatcaaactgaccagtctgctcaccaacaccgtggttcagacctacaac
gccggtaagccggtgtggagctgctgttggtgtttggacaactgcaactacgtctacgcc
ggcctgagcaacggctccgtgctcgtgtacgacaccagagacacgagcacgcacgtgcag
gagctgcagccgctacgctcacggtgtcccgtggcgtccctgtgctacatcccgcgggcg
gcgtccagctcgttcccctgcggcgggctgatcgccagctccctggagggcggctgcttc
tgggagcaggtcaacgagaccacgtaccgaccgcacgcgctgccgctggagaccaccggc
tgcaccgacatccaggtggagacggagaccagacactgcctggtcacctacaggccaggc
cgctccaacccgtctctgcgctgcgtcctgatggcgctgacccgcacgccgcagcaggac
tccgcccagctgcccagctgctcctgctcgcccgtccagacgttcggcgccggctcgtcc
tgcaagctgctcaccaagaacgccgtcttcaggagcccagacgggggcgggactctggtg
tgcgccggggacgaggcgtccaactccaccttggtgtgggatgcagccagtggctctctg
ctccagaagctcccggccgacctcccggtgttggacatcagcccgttctcgttgaacgga
gagcacttcctggcctcgctgaccgagaagatgctgaagctctacaggtgggagtga
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