KEGG   Cyclopterus lumpus (lumpfish): 117732639
Entry
117732639         CDS       T09199                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    117732639 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clum03021]
    117732639 (taf5l)
   03036 Chromosome and associated proteins [BR:clum03036]
    117732639 (taf5l)
Transcription machinery [BR:clum03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     117732639 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     117732639 (taf5l)
Chromosome and associated proteins [BR:clum03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     117732639 (taf5l)
    STAGA complex
     117732639 (taf5l)
    TFTC complex
     117732639 (taf5l)
    SAGA complex
     117732639 (taf5l)
    SLIK complex
     117732639 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 EIF3I TFIID_NTD2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT122_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_IFT140_1st RMC1_N Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_WDR19_1st WD40_like PEP5_VPS11_N WD_LRWD1 Beta-prop_IP5PC_F PROPPIN
Other DBs
NCBI-GeneID: 117732639
NCBI-ProteinID: XP_034391596
Ensembl: ENSCLMG00005015705
UniProt: A0A8C2ZWZ8
LinkDB
Position
1:complement(23864391..23868585)
AA seq 602 aa
MKRVRTEQIQYAVAQYLKRRQYVDTDGSLKGAKLFQSAEEMAASLTVQTESGSTNIVSAA
PCQSDPQQYETQFSRLRSFLSETDISWAKEVSSVLYPLFVYLHLDLVHCGLKGAVDGFYS
RFHGAFLQDGEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLAEPAYGYLLRYLQS
EDNSALCRALSTHLQVEVTASRRTDYQLYEAAAGGTTAAPNSASSWAGVDGAEGGAVGVE
VPAAIPQSEAALETLQDCIKKVREGPPTLTTVCFYAFHHTEQTLNTAEVSADSRLLAAGF
DSSTVKLWSLRARKLKARPHPADVSLIHLACDVLEEEAEEEDDSGSEIKTLRGHSGPVFR
TAFLTDSTGLLSCSEDTTIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASGSHDRT
ARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGH
RGPVLSLAFSPNGKYLASAGEDQRVKLWDLATGTPFKDLRGHTDSVTSLSFSPDSSLVAS
SSIDNSVRVWDIRNSHGGTPADGSSGELVGLYTGNTSNVLNVQFMACNLLLVTGTAQEKA
EQ
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgaagcgggttcgcactgagcagatccagtacgcggtggctcagtacctgaagcggagg
cagtatgtggacaccgacggctctctgaagggggccaagctcttccagtctgcggaggag
atggctgccagtctcacagtgcagacggagtcggggagcaccaacatcgtctctgctgcg
ccctgccagtctgaccctcagcaatacgagacccagttctccaggctacgctcctttctg
tcagaaacggacatatcctgggcgaaggaagtgagcagcgtcctctacccgctcttcgtc
tacctccacctggacctggtgcactgcggcctgaagggggcagtggacggtttctacagt
cgtttccacggcgcctttcttcaggacggcgagcagcgcgccaccatagagcagctgcgc
catgttctcaccgcgcaggacgttgcggccaaccccaagctgagtgccttcctggagcac
aagtacgtggttcacctggcggaaccggcctacggctacctgctgcggtacctgcagagt
gaggacaacagcgccctctgcagggccctgagcacacacctgcaggtggaggtcaccgcc
tccaggcgcacagactaccagctgtacgaagctgccgccgggggaacgaccgccgccccg
aactccgcctcctcctgggcgggggtggacggggcggagggcggcgcggtgggggtggag
gtccccgcggcgatccctcagagcgaggcggccctggagaccctgcaggactgcatcaag
aaagtccgcgagggtccccccacgctcaccacggtgtgcttctacgccttccaccacacg
gagcagacgctgaacaccgccgaggtgtcggccgacagtcgcctgctggccgccggcttc
gacagctccacggtgaagctgtggagcctccgagccagaaagctgaaggccagaccgcat
ccggctgacgtgtcgctcatccacctggcctgcgacgtgctggaggaggaagcggaggaa
gaagacgactccggcagcgagatcaagacgctgcgaggtcacagcggcccggtgtttcgg
accgccttcctgacggacagcacgggcctgctctcctgctccgaggacacgaccatccgc
tactgggacctgggcagcttcaccaacacggcgctctaccagggccacgcctacccggtg
tgggacgtggacgtgagcccctgcagcctctacttcgccagcggctcccacgaccggacg
gcccgcctctggacgttctcgcgcacctacccgctgcggctctacgccgggcacctcgcc
gacgtcgactgcgtcaagttccaccccaactccaactacctggccaccggctccacggac
aagaccgtccgcctgtggagcacccagcagggagcgtccgtccgcctcttcaccggccac
cggggccccgtgctgtcgctcgccttctcgcctaacgggaagtacttggcgtccgccggc
gaggaccagagggtgaagctgtgggatttggcgacggggacgccgttcaaggacctgcgt
ggacacacggacagcgtcaccagcctgtccttcagcccggacagcagcctggtggcgtcg
tcctctatagacaactcggtgcgggtgtgggacatccggaactcccacggcgggacgccg
gccgacggctcgtccggcgagctggtgggactgtacaccgggaacaccagcaacgtgctg
aacgtccagttcatggcctgcaacctgctgctggtgacgggaaccgcacaagagaaagcc
gaacagtag

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